Scaffold Ga0209300_1000200

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1000200
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36585
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (82.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002130	Metagenome / Metatranscriptome	591	Y
F022398	Metagenome	214	Y
F070855	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_100020010	F022398	AGGA	VTTVNTGKHVTRALEALEEFGRMTAQEFADWADISRYDAHAVLIRMNQRTKAGDKRIHIADWSYEHDGARRYPRPVFCLGDKTDKTKPKADPGANRRRYDAKRNKTFRMNSVFNMAMPRDRVREMAKIVGQSQLPA
Ga0209300_100020033	F002130	N/A	MSEKPESVLDKVLAYVDSPFKLFAAILMGVIAFAGYFLWQNQEFMRDAYKESKKLPEINTSRTDDASAMLIKKTGAVVVAVFKVNPLFNSRVLYRAYTKDGRDKAIEDIDVGLFSQNSSNNSDVVKLMTNDIPCGEYRYAQSEVGLWYLDKGVVYTCRISVPPDSHRFVGQITVGWTQPPENIEQVKFMLEIASAMLTKRGN
Ga0209300_100020049	F070855	N/A	MKHHKYHQHYQVRAAKLHARAEAALDLLAALVIGIGLAAALFYGWSA