Basic Information | |
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Taxon OID | 3300027297 Open in IMG/M |
Scaffold ID | Ga0208241_1051076 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 655 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Harvard Forest LTER, Petersham, MA, USA | |||||||
Coordinates | Lat. (o) | 42.550409 | Long. (o) | -72.180244 | Alt. (m) | Depth (m) | 0 to .1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F016791 | Metagenome / Metatranscriptome | 244 | Y |
F065001 | Metagenome | 128 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208241_10510761 | F065001 | N/A | KFADKFGTLGTHLKNAQQSYGESDKLFEKAQNTLEGMLGGGASDPALEDTQVKMAFPAEASAKKSA |
Ga0208241_10510762 | F016791 | N/A | GELPVQGPVGGQPALILASSPASLVVLPPMGMKPGAAPVEVYCAKKIASAFLTTFVALELEADSSPLKPGEHRFLSVRMRGTTSKISLEARNLAPDIAELTGGAVVKQSSSGSANNTAQFEVVGHKRGSFMISIRLVPLAGRPIPNP |
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