Metagenome Family F065001

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065001
Family Type	Metagenome
Number of Sequences	128
Average Sequence Length	57 residues
Representative Sequence	GTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLPLPSEASIKKGA
Number of Associated Samples	86
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.78 %
% of genes near scaffold ends (potentially truncated)	98.44 %
% of genes from short scaffolds (< 2000 bps)	85.16 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.125 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (60.156 % of family members)
Environment Ontology (ENVO)	Unclassified (56.250 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.938 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.94% β-sheet: 0.00% Coil/Unstructured: 67.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF13487	HD_5	6.25
PF13672	PP2C_2	3.12
PF02646	RmuC	1.56
PF13551	HTH_29	0.78
PF02687	FtsX	0.78
PF08818	DUF1801	0.78
PF02371	Transposase_20	0.78
PF14559	TPR_19	0.78
PF01694	Rhomboid	0.78
PF01425	Amidase	0.78
PF02129	Peptidase_S15	0.78
PF07719	TPR_2	0.78
PF03167	UDG	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	1.56
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.78
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.78
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.78
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.78
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.78
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.78
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.12 %
Unclassified	root	N/A	21.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.12 %
Unclassified	root	N/A	21.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.12 %
Unclassified	root	N/A	21.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	72.66 %
Unclassified	root	N/A	21.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.56 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002914\|JGI25617J43924_10062018	All Organisms → cellular organisms → Bacteria → Acidobacteria	1365	Open in IMG/M
3300002914\|JGI25617J43924_10260069	Not Available	589	Open in IMG/M
3300005167\|Ga0066672_10661635	Not Available	673	Open in IMG/M
3300005174\|Ga0066680_10491213	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300005602\|Ga0070762_11169860	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300006174\|Ga0075014_100607384	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300006755\|Ga0079222_10193493	All Organisms → cellular organisms → Bacteria → Acidobacteria	1214	Open in IMG/M
3300006755\|Ga0079222_10599343	All Organisms → cellular organisms → Bacteria → Acidobacteria	841	Open in IMG/M
3300006806\|Ga0079220_11054837	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
3300007255\|Ga0099791_10471277	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300007258\|Ga0099793_10130238	All Organisms → cellular organisms → Bacteria → Acidobacteria	1182	Open in IMG/M
3300007265\|Ga0099794_10253690	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300007265\|Ga0099794_10759607	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300009012\|Ga0066710_101016700	All Organisms → cellular organisms → Bacteria → Acidobacteria	1280	Open in IMG/M
3300009012\|Ga0066710_103761999	Not Available	570	Open in IMG/M
3300009038\|Ga0099829_10085993	All Organisms → cellular organisms → Bacteria → Acidobacteria	2418	Open in IMG/M
3300009038\|Ga0099829_11340770	Not Available	591	Open in IMG/M
3300009088\|Ga0099830_10056596	All Organisms → cellular organisms → Bacteria → Acidobacteria	2787	Open in IMG/M
3300009088\|Ga0099830_10103880	All Organisms → cellular organisms → Bacteria → Acidobacteria	2125	Open in IMG/M
3300009088\|Ga0099830_11580218	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300009088\|Ga0099830_11627221	Not Available	538	Open in IMG/M
3300009088\|Ga0099830_11653986	Not Available	534	Open in IMG/M
3300009088\|Ga0099830_11667213	Not Available	532	Open in IMG/M
3300009089\|Ga0099828_10097038	All Organisms → cellular organisms → Bacteria → Acidobacteria	2543	Open in IMG/M
3300009089\|Ga0099828_10328518	All Organisms → cellular organisms → Bacteria → Acidobacteria	1377	Open in IMG/M
3300009089\|Ga0099828_11948328	Not Available	515	Open in IMG/M
3300009090\|Ga0099827_10084731	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
3300009143\|Ga0099792_10976194	Not Available	565	Open in IMG/M
3300009143\|Ga0099792_11055169	Not Available	545	Open in IMG/M
3300010337\|Ga0134062_10182288	All Organisms → cellular organisms → Bacteria → Acidobacteria	949	Open in IMG/M
3300010379\|Ga0136449_103528568	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300011269\|Ga0137392_10950260	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300011269\|Ga0137392_11159386	Not Available	631	Open in IMG/M
3300011270\|Ga0137391_10122982	All Organisms → cellular organisms → Bacteria → Acidobacteria	2252	Open in IMG/M
3300011270\|Ga0137391_10734617	All Organisms → cellular organisms → Bacteria → Acidobacteria	818	Open in IMG/M
3300011271\|Ga0137393_10216900	All Organisms → cellular organisms → Bacteria → Acidobacteria	1618	Open in IMG/M
3300011271\|Ga0137393_10315141	All Organisms → cellular organisms → Bacteria → Acidobacteria	1333	Open in IMG/M
3300011271\|Ga0137393_10920618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300011271\|Ga0137393_10940528	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300011271\|Ga0137393_11141062	Not Available	662	Open in IMG/M
3300011271\|Ga0137393_11523684	Not Available	558	Open in IMG/M
3300011444\|Ga0137463_1108340	All Organisms → cellular organisms → Bacteria → Acidobacteria	1045	Open in IMG/M
3300012096\|Ga0137389_10471987	All Organisms → cellular organisms → Bacteria → Acidobacteria	1075	Open in IMG/M
3300012096\|Ga0137389_10828592	All Organisms → cellular organisms → Bacteria → Acidobacteria	794	Open in IMG/M
3300012189\|Ga0137388_10915973	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
3300012189\|Ga0137388_11903939	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300012199\|Ga0137383_10081966	All Organisms → cellular organisms → Bacteria → Acidobacteria	2332	Open in IMG/M
3300012202\|Ga0137363_10223938	All Organisms → cellular organisms → Bacteria → Acidobacteria	1519	Open in IMG/M
3300012202\|Ga0137363_10853519	All Organisms → cellular organisms → Bacteria → Acidobacteria	773	Open in IMG/M
3300012203\|Ga0137399_11012285	All Organisms → cellular organisms → Bacteria → Acidobacteria	699	Open in IMG/M
3300012205\|Ga0137362_11067725	Not Available	687	Open in IMG/M
3300012208\|Ga0137376_11303839	Not Available	616	Open in IMG/M
3300012209\|Ga0137379_10650830	All Organisms → cellular organisms → Bacteria → Acidobacteria	960	Open in IMG/M
3300012210\|Ga0137378_11435613	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300012285\|Ga0137370_10029159	All Organisms → cellular organisms → Bacteria → Acidobacteria	2851	Open in IMG/M
3300012361\|Ga0137360_10053969	All Organisms → cellular organisms → Bacteria → Acidobacteria	2908	Open in IMG/M
3300012361\|Ga0137360_11840587	Not Available	511	Open in IMG/M
3300012362\|Ga0137361_10255295	All Organisms → cellular organisms → Bacteria → Acidobacteria	1598	Open in IMG/M
3300012362\|Ga0137361_11138520	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300012363\|Ga0137390_10990062	All Organisms → cellular organisms → Bacteria → Acidobacteria	793	Open in IMG/M
3300012582\|Ga0137358_10309724	All Organisms → cellular organisms → Bacteria → Acidobacteria	1072	Open in IMG/M
3300012582\|Ga0137358_10486526	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300012582\|Ga0137358_10896991	Not Available	582	Open in IMG/M
3300012683\|Ga0137398_10074467	All Organisms → cellular organisms → Bacteria → Acidobacteria	2078	Open in IMG/M
3300012683\|Ga0137398_10565583	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300012917\|Ga0137395_10547157	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300012917\|Ga0137395_10919729	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300012918\|Ga0137396_10735945	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300012922\|Ga0137394_10907001	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300012923\|Ga0137359_10081146	All Organisms → cellular organisms → Bacteria → Acidobacteria	2847	Open in IMG/M
3300012924\|Ga0137413_10846276	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300012925\|Ga0137419_10078900	All Organisms → cellular organisms → Bacteria → Acidobacteria	2220	Open in IMG/M
3300012927\|Ga0137416_11668554	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300012927\|Ga0137416_12114507	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300012929\|Ga0137404_11346501	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300012930\|Ga0137407_11858169	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300012930\|Ga0137407_11972033	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300015054\|Ga0137420_1349277	All Organisms → cellular organisms → Bacteria → Acidobacteria	1934	Open in IMG/M
3300015241\|Ga0137418_10035252	All Organisms → cellular organisms → Bacteria → Acidobacteria	4622	Open in IMG/M
3300015242\|Ga0137412_10954564	Not Available	617	Open in IMG/M
3300015242\|Ga0137412_11191678	Not Available	535	Open in IMG/M
3300018058\|Ga0187766_10414684	All Organisms → cellular organisms → Bacteria → Acidobacteria	893	Open in IMG/M
3300019789\|Ga0137408_1299921	All Organisms → cellular organisms → Bacteria → Acidobacteria	922	Open in IMG/M
3300020579\|Ga0210407_10015947	All Organisms → cellular organisms → Bacteria	5581	Open in IMG/M
3300020580\|Ga0210403_11435583	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300020581\|Ga0210399_10814396	All Organisms → cellular organisms → Bacteria → Acidobacteria	762	Open in IMG/M
3300021088\|Ga0210404_10448714	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300021088\|Ga0210404_10538339	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300021170\|Ga0210400_10359695	All Organisms → cellular organisms → Bacteria → Acidobacteria	1199	Open in IMG/M
3300021170\|Ga0210400_10542316	Not Available	960	Open in IMG/M
3300021170\|Ga0210400_10787760	All Organisms → cellular organisms → Bacteria → Acidobacteria	779	Open in IMG/M
3300021170\|Ga0210400_11455857	Not Available	544	Open in IMG/M
3300021171\|Ga0210405_10204014	All Organisms → cellular organisms → Bacteria → Acidobacteria	1567	Open in IMG/M
3300021178\|Ga0210408_10127417	All Organisms → cellular organisms → Bacteria → Acidobacteria	2010	Open in IMG/M
3300021420\|Ga0210394_11404049	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300021559\|Ga0210409_11069515	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
3300024330\|Ga0137417_1348304	All Organisms → cellular organisms → Bacteria → Acidobacteria	3197	Open in IMG/M
3300025922\|Ga0207646_11687196	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300026298\|Ga0209236_1160353	All Organisms → cellular organisms → Bacteria → Acidobacteria	933	Open in IMG/M
3300026328\|Ga0209802_1021314	All Organisms → cellular organisms → Bacteria → Acidobacteria	3554	Open in IMG/M
3300026332\|Ga0209803_1038777	All Organisms → cellular organisms → Bacteria → Acidobacteria	2184	Open in IMG/M
3300026482\|Ga0257172_1064781	Not Available	670	Open in IMG/M
3300026514\|Ga0257168_1114468	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300026548\|Ga0209161_10215564	All Organisms → cellular organisms → Bacteria → Acidobacteria	1043	Open in IMG/M
3300026551\|Ga0209648_10391849	Not Available	920	Open in IMG/M
3300026557\|Ga0179587_10138671	All Organisms → cellular organisms → Bacteria → Acidobacteria	1507	Open in IMG/M
3300027297\|Ga0208241_1051076	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300027643\|Ga0209076_1103087	All Organisms → cellular organisms → Bacteria → Acidobacteria	809	Open in IMG/M
3300027671\|Ga0209588_1149809	All Organisms → cellular organisms → Bacteria → Acidobacteria	740	Open in IMG/M
3300027748\|Ga0209689_1106598	All Organisms → cellular organisms → Bacteria → Acidobacteria	1434	Open in IMG/M
3300027846\|Ga0209180_10394326	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300027862\|Ga0209701_10383790	All Organisms → cellular organisms → Bacteria → Acidobacteria	787	Open in IMG/M
3300027862\|Ga0209701_10637874	Not Available	559	Open in IMG/M
3300027875\|Ga0209283_10122515	All Organisms → cellular organisms → Bacteria → Acidobacteria	1714	Open in IMG/M
3300027882\|Ga0209590_10252204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1126	Open in IMG/M
3300028047\|Ga0209526_10228389	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300028047\|Ga0209526_10283866	All Organisms → cellular organisms → Bacteria → Acidobacteria	1124	Open in IMG/M
3300031231\|Ga0170824_128583907	All Organisms → cellular organisms → Bacteria → Acidobacteria	898	Open in IMG/M
3300031753\|Ga0307477_10281096	Not Available	1150	Open in IMG/M
3300031754\|Ga0307475_10671604	Not Available	827	Open in IMG/M
3300031754\|Ga0307475_11291905	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300031820\|Ga0307473_10675801	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300031962\|Ga0307479_10030849	All Organisms → cellular organisms → Bacteria → Acidobacteria	5111	Open in IMG/M
3300031962\|Ga0307479_10570071	Not Available	1114	Open in IMG/M
3300031962\|Ga0307479_10810597	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300032180\|Ga0307471_100733768	All Organisms → cellular organisms → Bacteria → Acidobacteria	1153	Open in IMG/M
3300032180\|Ga0307471_102454410	Not Available	659	Open in IMG/M
3300032205\|Ga0307472_101085816	All Organisms → cellular organisms → Bacteria → Acidobacteria	756	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.44%
Aquatic	Environmental → Aquatic	1.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.44%
Sediment	Environmental → Aquatic → Sediment	1.56%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.75%
Loam	Environmental → Terrestrial → Soil → Loam	3.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	61.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.12%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.78%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	60.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.34%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.78%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.78%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25617J43924_100620181	3300002914	Grasslands Soil	GMEKQMEKFADKFSTLGTHLKNAQQSYSESDKLFEKAQNTLETMLGAGVPELPFEDPPEALPLPREASIKKGA*
JGI25617J43924_102600691	3300002914	Grasslands Soil	GTHLKNAQQSYSESDKLFEKAHNTLETMLGAGIPELPFENPPDALPLPREASIKKGA*
Ga0066672_106616351	3300005167	Soil	HLKNAQQSYSESDKLFEKAQNTLQTMLGAGVPELPFEDPPATLVPPREASAKKGG*
Ga0066680_104912131	3300005174	Soil	LSGMEKQLEKFADKFGTLGTHLKNAQQSYSESDKLFEKAQNTLEGMLGAGTVDALPEDSTMSPAFPPEASAKKSA*
Ga0070762_111698602	3300005602	Soil	SESDKLFERAQNTLETMLGAGVPELPFENPQGTLPLPVEASIKKSA*
Ga0075014_1006073841	3300006174	Watersheds	HLKNAQQSYSDSEKLFERAHNTLETMLGAGVPELPFENPQGALPLLPPEASLKKGA*
Ga0079222_101934932	3300006755	Agricultural Soil	SGMEKQMEKFADKFATLGTHLKNAQQSYSESDKLFERAQNTLETVLGAGVPELPFEDPPATLVLPREASAKKGA*
Ga0079222_105993431	3300006755	Agricultural Soil	TESDKLFEKAQNTLQTMLGAGAPELPFDDPPDPLPLLREASIKKGA*
Ga0079220_110548371	3300006806	Agricultural Soil	DKLFERAQNTLETVLGAGVPELPFEDPPATLVLPREASAKKGA*
Ga0099791_104712771	3300007255	Vadose Zone Soil	GMEKQLEKFADKFGTLGTHLKNAQQSYSESDKLFEKAQNTLETMLGAGVPELPFENPQGTLPLPREASVKKSA*
Ga0099793_101302382	3300007258	Vadose Zone Soil	QMEKFADKFATLGTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLPLPREASAKKGA*
Ga0099794_102536902	3300007265	Vadose Zone Soil	DSEKLFERANNTLETMLGAGVPELPFENPQGTLPLPREASVKKSA*
Ga0099794_107596072	3300007265	Vadose Zone Soil	EKFADKFGILGTHLKNAQQSYSESEKLFERAHNTLETMLGAGVPELPFENPQGALPLPPEASIKKGA*
Ga0066710_1010167001	3300009012	Grasslands Soil	ESDKLFEKAHNTLETVLGAGVPELPFENPPEALPLPREASIKKGA
Ga0066710_1037619991	3300009012	Grasslands Soil	THLKNAQQSYSESDKLFEKAQNTLQTMLGAGVPELPFDDPPAALVPPREASAKKGG
Ga0099829_100859933	3300009038	Vadose Zone Soil	LSGMEKQMEKFADKFSTLGTHLKNAQQSYSESDKLFEKAHNTLETMLGAGVPELPFEDPPEALPLPREASIKKGA*
Ga0099829_113407702	3300009038	Vadose Zone Soil	FADKFGTLGTHLKNAQQSYSESDKLFEKAQNTLEGMLGAGTVDALPEDSTMSPAFPPEASAKKSA*
Ga0099830_100565964	3300009088	Vadose Zone Soil	SGMEKQMEKFADKFSTLGTHLKNAQQSYSESDKLFEKAHNTLETMLGAGVPELPFEDPPEALPLPREASIKKGA*
Ga0099830_101038802	3300009088	Vadose Zone Soil	MEKQMEKFADKFATLGTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLPLPREASAKKGA*
Ga0099830_115802181	3300009088	Vadose Zone Soil	KLFERAQNTLETMLGAGVPELPFENPQGSLPLPEEASIKKGA*
Ga0099830_116272211	3300009088	Vadose Zone Soil	GVEKQLEKFADKFGTLGIHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLPLPPEVSIKKGA*
Ga0099830_116539861	3300009088	Vadose Zone Soil	QSYSESDKLFEKAQNTLETMLGAGVPELPFENPPDELPLPREASIRKGA*
Ga0099830_116672131	3300009088	Vadose Zone Soil	KFGTLGTHLKNAQQSYSESDKLFEKAQNTLETMLGAGVSDATLENAQGALALPREASAKKGA*
Ga0099828_100970384	3300009089	Vadose Zone Soil	DKFGTLGTHLKNAQQSYGESDKLFEKAHNTLETMLGAGVPELPFEDPPEALPLPREASIKKGA*
Ga0099828_103285181	3300009089	Vadose Zone Soil	DKFGTLGIHLKNAQQSYSDSDKLFEKAQNTLENMLGPGVSDPTLENGQGTLALPSEASIKKSA*
Ga0099828_119483281	3300009089	Vadose Zone Soil	KFSTLGTHLKNAQQSYSESDKLFEKAQNTLETMLGAGVPELPFENPPDELPLPREASIRKGA*
Ga0099827_100847314	3300009090	Vadose Zone Soil	DKLFEKAQNTLQTMLGAGVPELPFDNPPGALELPREASAKKGA*
Ga0099792_109761941	3300009143	Vadose Zone Soil	KLFERAQNTLETMLGAGVPELPFENPQGTLPLPREASAKKGA*
Ga0099792_110551691	3300009143	Vadose Zone Soil	KFSTLGTHLKNAQQSYSESDKLFEKAHNTLETMLGAGVPELPFENPPEALPLPREASIKKGA*
Ga0134062_101822881	3300010337	Grasslands Soil	QQSYSESDKLFERAQNSLETMLGAGVPELPFENPQGSLPLPSEASIKKSA*
Ga0136449_1035285682	3300010379	Peatlands Soil	EKQLEKFADKFATLGTHLKNAQQSYGDSEKLFERAHNTLETMLGAGVPELPFENPLGAPELPREASIKKGA*
Ga0137392_109502601	3300011269	Vadose Zone Soil	TLGTHLKNAQQSYSESDKLFEKAQNNLETMLGAGASDTALEDVQGTLALPREASAKKTA*
Ga0137392_111593861	3300011269	Vadose Zone Soil	GTHLKNAQQSYSESDKLFEKAQNTLEIMLGAGVPDPALENPKGTLALPREASSKKGA*
Ga0137391_101229823	3300011270	Vadose Zone Soil	GMEKQLEKFADKFGTLGTHLKNAQQSYSESDKLFEKAQNTLEGMLGAGTADALPENSAAAPVFPPETIAKKSA*
Ga0137391_107346172	3300011270	Vadose Zone Soil	GTHLKNAQQSYSESDKLFEKAHNTLETMLGAGVPELPFENPPEALPLPREASIKKGA*
Ga0137393_102169001	3300011271	Vadose Zone Soil	LKNAQQSYSESDKLFEKVQNNLETMLGAGASDTALEDVQGTLALPREASAKKTA*
Ga0137393_103151412	3300011271	Vadose Zone Soil	LKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFDNSQGPLPLPLPHEASSKKGA*
Ga0137393_109206181	3300011271	Vadose Zone Soil	TLETMLGAGVPELPFENPQGTLALPREASAKKGA*
Ga0137393_109405282	3300011271	Vadose Zone Soil	EKAHNTLEIMLGAGVPDPALEDAQGKLALPREASIKKGA*
Ga0137393_111410621	3300011271	Vadose Zone Soil	LGTHLKNAQQSYSESDKLFEKAQNTLETMLGAGDSEHALENAQGTLALPREAGAK*
Ga0137393_115236841	3300011271	Vadose Zone Soil	QMEKFADKFGTLGTHLKNAQQSYGESDKLFEKAQNTLQTMLGAGVPELPFENPPEALPLPREASIKKGA*
Ga0137463_11083401	3300011444	Soil	KQMEKFADKFGVLGTHLKNAQQSYSESDKLFEKAQNALEGMLGAGTEPAALENAQGAIGLPAEASAKKGA*
Ga0137389_104719871	3300012096	Vadose Zone Soil	THLKNAQQSYSESDKLFEKAHNTLEIMLGAGVPDPALEDAQGKLALPREASIKKGA*
Ga0137389_108285922	3300012096	Vadose Zone Soil	EKAQNTLETMLGAGVSDHALENAQGTLALPREAGAK*
Ga0137388_109159731	3300012189	Vadose Zone Soil	KFRTLGTHLKNAQQSYSESDKLFEKAQNTLETMLGAGVSDHALENAQGTLALPREAGAK*
Ga0137388_119039391	3300012189	Vadose Zone Soil	KQMEKFAEKFGTLGTHLKNAQQSYSESDKLFEKAHNTLEGVLSAGTSDPALENTQGTLALSAEASSKKSA*
Ga0137383_100819661	3300012199	Vadose Zone Soil	AQQSYSESDKLFERAQNTLETMLGAGVPELPFDNPQGTLALPRETSAKKGA*
Ga0137363_102239381	3300012202	Vadose Zone Soil	KFTTLGTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLPLPLPHEASSKKGA*
Ga0137363_108535191	3300012202	Vadose Zone Soil	ESDKLFEKAHNILETMLGAGVPELPFENPPDALPLPREASIKKGA*
Ga0137399_110122852	3300012203	Vadose Zone Soil	HLKNAQQSYSESDKLFEKAHNILETMLGAGVPELPFENPPDALPLPREASIKKGA*
Ga0137362_110677251	3300012205	Vadose Zone Soil	ADKFGTLGTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLALPREASAKKGA*
Ga0137376_113038391	3300012208	Vadose Zone Soil	QSYSESDKLFERAQNSLETMLGGGVPELPFENPQGSLPLPSEASIKKSA*
Ga0137379_106508302	3300012209	Vadose Zone Soil	FERAQNTLETMLGAGVPELPFDNPQGTLALPREASAKKGA*
Ga0137378_114356131	3300012210	Vadose Zone Soil	KLFERAQNTLETMLGAGVPELPFDNPQGTLALPREASAKKGA*
Ga0137370_100291595	3300012285	Vadose Zone Soil	FADKFETLGTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFEDPRGTLALPREASIKKGA*
Ga0137360_100539694	3300012361	Vadose Zone Soil	HLKNAQQCYSESDKLFERAQNTLETMLGAGVPELPFEDPRGTLALPREASIKKGA*
Ga0137360_118405871	3300012361	Vadose Zone Soil	TLETVLGAGVPELPFENPAEALPLPREASIKKGA*
Ga0137361_102552953	3300012362	Vadose Zone Soil	EKFADKFGVLGTHLKNAQQSYSESDKLFERAQSTLEGMLGGGTDDATLENAQGNLALPAEASVKKSA*
Ga0137361_111385201	3300012362	Vadose Zone Soil	MEIQMEKFADKFGVLGTHLKNAQQSYSESDKLFEKANNTLEDMLGAGTDDAALENVQDTIALPAEASVKKSA*
Ga0137390_109900621	3300012363	Vadose Zone Soil	ANNTLETMLGAGVPELPFENPQGTLPLPREASVKKSA*
Ga0137358_103097242	3300012582	Vadose Zone Soil	GMEIQMEKFADKFGVLGTHLKNAQQSYSESDKLFEKANNTLEGLLGGGTDDAALENVQDTIALPAEASVKKSV*
Ga0137358_104865262	3300012582	Vadose Zone Soil	TDKFGTLGTHLKNAQQSYSESDKLFEKAQNTLQTMLGAGIPELPFEDPPATLARPREASAKKGA*
Ga0137358_108969911	3300012582	Vadose Zone Soil	NTLETMLGAGVPELPFENPQGPLPLPSEASIKKGA*
Ga0137398_100744673	3300012683	Vadose Zone Soil	GTHLKNAQQSYSESDKLFEKAHNTLETVLGAGVPELPFENPAEALPLPREASIKKGA*
Ga0137398_105655831	3300012683	Vadose Zone Soil	HLKNAQQSYSESDKLFERAQNTRETMLGAGVPELPFEDPPGKLPLPPEASIKKSA*
Ga0137395_105471571	3300012917	Vadose Zone Soil	HLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGSLPLPEEASIKKGA*
Ga0137395_109197292	3300012917	Vadose Zone Soil	FERAQNTLETMLGAGVPELPFDNPQGTLALPRETSAKKGA*
Ga0137396_107359452	3300012918	Vadose Zone Soil	YSESDKLFEKAHNTLETMLGAGVPELPFENPPGTLELPREASAKKGA*
Ga0137394_109070011	3300012922	Vadose Zone Soil	YSDSEKLFERAHNTLETMLGAGVPELPFENPQGTLALPREASIKKGA*
Ga0137359_100811464	3300012923	Vadose Zone Soil	LKNAQQSYSDSEKLFERAHNTLETMLGAGVPELPFENPQGTLALPREASIKKGA*
Ga0137413_108462762	3300012924	Vadose Zone Soil	STLGTHLKNAQQSYSESDKLFEKAHNILETMLGAGVPELPFENPPDALPLPREASIKKGA
Ga0137419_100789001	3300012925	Vadose Zone Soil	KQMEKFADKFGTLGTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFEDPPGTLPLPPEASIKKSA*
Ga0137416_116685541	3300012927	Vadose Zone Soil	FTDKFGTLGTHLKNAQQSYSESDKLFEKAQNTLQTMLGTGVPELPFDNPQGTLELPREVSAKKGG*
Ga0137416_121145072	3300012927	Vadose Zone Soil	YSESGKLFDRAQNTLETMLGAGVPELPFEDPQGTLALPPEASIKKGA*
Ga0137404_113465011	3300012929	Vadose Zone Soil	VLGTHLKNAQQSYSESDKLFERAQSTLEGMLGGGTDDAALENVQGTLALPAEASVKKST*
Ga0137407_118581692	3300012930	Vadose Zone Soil	FADKFDTLATHLKNAQQSYSQSDKLFERAQNTLETMLGAGVPELPFENPQGTLALPREASIKKGA*
Ga0137407_119720331	3300012930	Vadose Zone Soil	HLKNAQQSYSESDKLFERAQSTLEGMLGGGTDDAALENVQGNLALPAEASVKKSA*
Ga0137420_13492772	3300015054	Vadose Zone Soil	CLSGMEIQMEKFADKFGILGTHLKNAQQSYGESDKLFERAQSTLEGMLGGGTEAALDNVQGDLSLPAEASVKKSA*
Ga0137418_100352526	3300015241	Vadose Zone Soil	AQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLPLPREASAKKGA*
Ga0137412_109545641	3300015242	Vadose Zone Soil	AHNTLETMLGAGVPELPFENPPDSLPLPREASIKKGA*
Ga0137412_111916782	3300015242	Vadose Zone Soil	DKLFERTQNTLETMLGAGVPELPFENPQGALPLPREASIKKGA*
Ga0187766_104146841	3300018058	Tropical Peatland	KLFERARNSLETMLGAGVPELPFEDPQATIALPAEASAKKSA
Ga0137408_12999211	3300019789	Vadose Zone Soil	VFRAWKNRWRSFPKFSEKFGVLGTHLKNAQQSYSESDKLFEKAHDTLQGVLGAGTGDPALENVQGTLALSAEVSAKKSA
Ga0210407_100159475	3300020579	Soil	LSGMERQLEKFADKFATLGTHLKNAQQSYSESDKLFEKAQNTLQTMLGAGVPELPFENPPAALPFPPEASAKKSA
Ga0210403_114355831	3300020580	Soil	QSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLALPREASIKKSA
Ga0210399_108143962	3300020581	Soil	EKFADKFGVLGTHLKNAQQTYSESDKLFEKAQNTLEGMLGGGAETVALENAQGSLALTAETSIKKSA
Ga0210404_104487142	3300021088	Soil	DKFGTLGTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQSPLPLPSEASIKKGA
Ga0210404_105383391	3300021088	Soil	LKNAQQTYSESDKLFEKAQNTLEGMLSGGAETAALENAQGSLALPEEASIKKSA
Ga0210400_103596951	3300021170	Soil	ERANNTLETMLGAGVPELPFENPQPALPLPPGASIKKSA
Ga0210400_105423161	3300021170	Soil	TLGTHLKNAQQSYSDSDKLFEKAQNTLETMLGAGVPELPFEGPPVTLPLPREASAKKGA
Ga0210400_107877601	3300021170	Soil	LSGMEKQMGKFADKFETLGTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLPLPSEASIKKGA
Ga0210400_114558571	3300021170	Soil	GTHLKNAQQSYSDSEKLFERANNTLETMLGAGVPELPFENPQRALPLPPEASVKKSA
Ga0210405_102040143	3300021171	Soil	DKLFEKAQNTLETMLGAGVPELPFENPPVTLAPPREASAKKSA
Ga0210408_101274173	3300021178	Soil	KAQNTLQTMLGAGIPELPFENPPAALPFPPEASAKKSA
Ga0210394_114040491	3300021420	Soil	KFADKFGTLGTHLKNAQQSYGESDKLFEKAQSTLEGMLGAGAPDATLEDTQAKIAFPAEISAKKSA
Ga0210409_110695151	3300021559	Soil	FADKFGTLGTHLKNAQQSYGESDKLFEKAQSTLEGMLGAGASDTALEDTQAKISFPAEISAKKSA
Ga0137417_13483046	3300024330	Vadose Zone Soil	MEKQLEKFADKFETLGTHLKNAQQATVIRTNSSKRRRTPRNMLGAGASDPALENVQGTLALPQEASIKKGA
Ga0207646_116871961	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	GTHLKNAQQSYSESDKLFERAQSTLEGMLGGGTDDAALENVQGNLALPAEASVKKSA
Ga0209236_11603531	3300026298	Grasslands Soil	LFERAHNTLETMLGAGIPELPFENPPGTLELPREASIKKSA
Ga0209802_10213144	3300026328	Soil	QMAKFTDKFGVLGTHLKNAQQSYSESDKLFERAQSTLEGMLGGGTDDATLENAQGNLALPAEASVKKSA
Ga0209803_10387771	3300026332	Soil	QQSYSESDKLFERAQNTLETVLGAGVPELPFEDPPATLVLPREASAKKGA
Ga0257172_10647812	3300026482	Soil	QQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGPLPLPSEASIKKGA
Ga0257168_11144682	3300026514	Soil	QLEKFADKFGILGTHLKNAQQSYSESEKLFERAHNTLETVLGAGVPELPFENPQGALPLPPEASIKKSA
Ga0209161_102155641	3300026548	Soil	HLKNAQQSYSESDKLFEKAQNTLQTMLGAGVPELPFEDPPATLVPPREASAKKGG
Ga0209648_103918492	3300026551	Grasslands Soil	HLKNAQQSYSESDKLFEKAHNALETMLGAGIPELPFEDPPEALPLPREASIKKGA
Ga0179587_101386713	3300026557	Vadose Zone Soil	QQIYSESDKLFEKAQNTLETMLGAGVPELPFENPPVTLAPPREASAKKSA
Ga0208241_10510761	3300027297	Forest Soil	KFADKFGTLGTHLKNAQQSYGESDKLFEKAQNTLEGMLGGGASDPALEDTQVKMAFPAEASAKKSA
Ga0209076_11030871	3300027643	Vadose Zone Soil	QSYSESDKLFERAQNTLETMLGAGVPELPFEDPRGTLALPREASIKKGA
Ga0209588_11498091	3300027671	Vadose Zone Soil	LSGMEKQLEKFADKFGTLGTHLKNAQQSYSDSDKLFEKAQNTLETMLGAGASDPALENVQGTLALPQEASIKKGA
Ga0209689_11065982	3300027748	Soil	HLKNAQQSYSESDKLFEKAQNTLQTMLGAGVPELPFDDPPAALVPPREASAKKGG
Ga0209180_103943262	3300027846	Vadose Zone Soil	SGMEKQLEKFADKFGTLGTHLKNAQQSYSESDKLFEKAQNTLEGMLGAGTVDALPEDSTMSPAFPPEASAKKSA
Ga0209701_103837902	3300027862	Vadose Zone Soil	STLGTHLKNAQQSYSESDKLFEKVHNTLETMLGAGVPELPFEDPPEALPLPREASIKKGA
Ga0209701_106378741	3300027862	Vadose Zone Soil	LKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLPLPPEVSIKKGA
Ga0209283_101225153	3300027875	Vadose Zone Soil	DKFGTLGTHLKNAQQSYSESDKLFEKAQNNLETMLGAGASDTTLEDVQGTLALPREASAKKTA
Ga0209590_102522041	3300027882	Vadose Zone Soil	MEKFADKFTTLGTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLALPREASAKKGA
Ga0209526_102283893	3300028047	Forest Soil	SDKLFERAQNTLETMLGAGVPELPFENPQGTRPLPSEASIKKGA
Ga0209526_102838662	3300028047	Forest Soil	RLLESLSGMEKQLEKFADKFETLGTHLKNAQQCYSESDKLFERAQNTLETMLGAGVPELPFEDPRGTLALPREASIKKGA
Ga0170824_1285839071	3300031231	Forest Soil	GILGTHLKNAQQSYSDSEKLFERAHNTLETMLGAGVPELPFENPQSTLELPPEASIKKGA
Ga0307477_102810961	3300031753	Hardwood Forest Soil	AQNTLETMLGAGVPELPFENAQGTLPLPREASAKKGA
Ga0307475_106716041	3300031754	Hardwood Forest Soil	GTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLPLPSEASIKKGA
Ga0307475_112919051	3300031754	Hardwood Forest Soil	EKQMEKFADKFATLGTHLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENAQGTLPLPREASAKKGA
Ga0307473_106758011	3300031820	Hardwood Forest Soil	AQQSYSESDKLFERAQNTLETMLGAGVPELPFENPQGTLALPREASAKKGA
Ga0307479_100308491	3300031962	Hardwood Forest Soil	LFERAQNTLETMLGAGVPELPFENAQGTLPLPREASAKKGA
Ga0307479_105700712	3300031962	Hardwood Forest Soil	HLKNAQQSYSESDKLFERAQNTLETMLGAGVPELPFENAQGTLPLPREASAKKGA
Ga0307479_108105971	3300031962	Hardwood Forest Soil	SDKLFERAQNTLETMLGAGVPELPFENAQGTLPLPPEASAKKGA
Ga0307471_1007337681	3300032180	Hardwood Forest Soil	GVLGTHLKNAQQSYSESDKLFEKAHDTLEGVLGAGSSEPALENLQGTLALSAEVSAKKSA
Ga0307471_1024544102	3300032180	Hardwood Forest Soil	LFEKAQNTLQTMLGTGVPELPFEDSPAPLAPPREATAKKSA
Ga0307472_1010858161	3300032205	Hardwood Forest Soil	HLRNAQQSYSESDKLFERAQSTLEGMLGGGTDDAALENVQGTLALPAEASAKKSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F065001

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences