NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208241_1045507

Scaffold Ga0208241_1045507


Overview

Basic Information
Taxon OID3300027297 Open in IMG/M
Scaffold IDGa0208241_1045507 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)692
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.550409Long. (o)-72.180244Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022091Metagenome / Metatranscriptome216Y
F100485Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208241_10455071F022091N/AAIDDALRRWSRAQLQVAAQVMPRAEYIERSEVFDMPDLTTMPTTATNNWMTSHLPGYALTLPDM
Ga0208241_10455072F100485GGAGGMLVIEILDGATVERAGALVACEQAAARRVRPELPAAFGSPDVCTAALQRLCDSGQHGLVVMGNGRAAAVMAA

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