Scaffold Ga0208525_1003146

Overview

Basic Information

• Taxon OID: 3300027288
• Scaffold ID: Ga0208525_1003146
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1678
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023905	Metagenome / Metatranscriptome	208	N
F039215	Metagenome / Metatranscriptome	164	N
F061987	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208525_10031462	F023905	GAGG	VSKLLDPDFWVAAWSKLLEPDFWVTLWSTFLGFGFWGTTRKAFSAPEVVIPLVPLLLIATYVGWKIKGGFDNGKIKGMKTQIDAAEQRLLSANEQRAAGADVDREVETLHKQVFDLKTRLETGVQHSELAARVGAITQTVTKLSSANNELQRTFIGPRDR
Ga0208525_10031463	F061987	AGG	MALTMRPTGLGHGVYKDAIDYAVFSGAWNVGRIYERRGFSDAVRFFWSLHGVVLTRPPDIHTDGHEPTLEMAKARLKRSWDRWLEWSERALAE
Ga0208525_10031464	F039215	N/A	MTTILRKYHSVARCTLLGEIVEDTATRYYYRLRSGDELTFVEKSPAIHLTPCPACPDWPAGQQRG