Scaffold Ga0208802_1009565

Overview

Basic Information

• Taxon OID: 3300027210
• Scaffold ID: Ga0208802_1009565
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1311
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023093	Metagenome / Metatranscriptome	211	Y
F044220	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208802_10095651	F023093	N/A	ASLGQGKKIVAGGLNVRITTQTHKPASAWITLLVIDDNQ
Ga0208802_10095653	F044220	N/A	MPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLPKAVVLCDSARPPASLPDGEGNY