Scaffold Ga0208926_1000007

Overview

Basic Information

• Taxon OID: 3300027205
• Scaffold ID: Ga0208926_1000007
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41764
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (32.14%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F003601	Metagenome / Metatranscriptome	477	Y
F013517	Metagenome / Metatranscriptome	270	Y
F015587	Metagenome	253	Y
F029405	Metagenome / Metatranscriptome	188	Y
F040073	Metagenome	162	Y
F073444	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208926_100000723	F015587	N/A	MTALNFRKNTAALLKGAATLVENAKLPAKGAIDAKLNEYRTRAAALIMPKDMAFVITPKTDV
Ga0208926_100000730	F029405	N/A	MRDFAFIDEQRNADLLDAMADIAYEQEQAMRESNQSDWDGIDEISVEERHACDHYNERYAYPSIYHGD
Ga0208926_100000734	F001165	N/A	MSDSLRIPDSIDTQRLQAMQLVAKMKESADKHGIGFIGGFISPDGQKFIMTNMDDDDTQALLPDNLK
Ga0208926_100000739	F001807	AGG	MNVLAIEHTVIDGNDVTVTAVVDDMRLIHRSTYLDPEEYAPALCRASFELDEGEQIPLDEDGFCSYLTDLNPNWELLPVDND
Ga0208926_100000742	F003601	AGG	MTEYTDDQLLAQALSNLGEYIHTHGTPDYVLVDSEDPRNEDDYDTWSYGTEPLPHDHTWQHASIDVSISPSEPE
Ga0208926_100000764	F040073	N/A	MLKFESSAEDLFWQEKMFRTINDCTSLSELKEIAVLLTKIATTRQMAIKGLVNDALNLMHENYSSKAKDITDSLS
Ga0208926_100000766	F002333	N/A	MQLQTELNSAQALIYSRSNIGRAYAGFDDTEISGIYLRDDNCIVVRRDGDEQAYDRTLIKTAFQQYTHRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWNYSHALGHLTSNAKLQQHWADKFIHLSDPGKVVALLQNDQTDLGHLVAPDGLRSPTRPIDLESELEENASGVQASTPEPYCSCGSFQRQLLDVSLFQQEIEGFKPWCIHLTWFHKYRELLCKRTEVRNALLSGTPDKCVAWWYAPPVDHLSDGKFVLLHTKSGAQAPLTHWRTYKPKEVFNQTHAWDLFFNMMEAGYVPFPGTALPQLQSAIKKK
Ga0208926_100000770	F013517	N/A	MFESLFTAVLPVMKDILWAAAGMLLSYAINKFQSNFN
Ga0208926_100000771	F001018	N/A	MTQITQVKLKDLNILKLYEHYGALERSIPLLTPESQELAQAELEACASLRSEKVDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLSWLRRSLPLDSNKISGRNYQFTLTRKKDLTVEITSDPEFWHTEERADYCIEEEITTTKRVVLRSMSGEVLDERTEPKTTTKIVPNLDAIRTAHQTGRQLPSGVKVIQEYSVRSKRIYAEPRVELEASEYPGHLLPED
Ga0208926_100000772	F073444	N/A	MNCHQHAVKDFDLQLEMNNLELDMIKDGEEVLPYNISKFEELEQKKLKLLVGKRFHQNAANAYWFHLAKCGK