Scaffold Ga0208672_1000144

Overview

Basic Information

• Taxon OID: 3300027185
• Scaffold ID: Ga0208672_1000144
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.689 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18589
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.69%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049653	Metagenome / Metatranscriptome	146	N
F095415	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208672_100014410	F049653	N/A	MARSKVYLRSQSGRTEDFDQFRQRLRKLGTSETMRFREVRKLLLKEAQPLVTEARNQAYADSQEPRGIRLKSRSALGAKFYNLYGSINKWANKGTTKAYVVIGLRGSRKQGAYYAPWQLFGGTEKNFKAKDFIGLAVDSTNVVEKAQKLMQRHIQKRITSVLR
Ga0208672_100014419	F095415	N/A	MAHEVDAQLVQEIRRAGCHQMKGDMIRWLNLHPKATALELVKHFCGTLWMSGSLEDGRYKEGQNYIK