NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255102_1045866

Scaffold Ga0255102_1045866


Overview

Basic Information
Taxon OID3300027144 Open in IMG/M
Scaffold IDGa0255102_1045866 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079934Metagenome115Y
F081076Metagenome / Metatranscriptome114Y
F102529Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0255102_10458661F081076N/ASTIIKNPEDVAMPKDISAQLMIMFQAVDVLATQDELTKFMAFVERIPSSEVQGVFFTMMMRNTKAIRLARNNMKIAEWAKNNHELF
Ga0255102_10458662F102529GGAGMTFSIAELFLLAWAIIASLGFGYVTSKFNHHRYITGELLARIAQGKMKITETDEQLTFEE
Ga0255102_10458663F079934GGAGGMSKQETRIKRGHVTLMKHPQTALYSGVMLMGTSSVEDNVS

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