Scaffold Ga0255102_1001057

Overview

Basic Information

• Taxon OID: 3300027144
• Scaffold ID: Ga0255102_1001057
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7247
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F002515	Metagenome / Metatranscriptome	552	Y
F003965	Metagenome / Metatranscriptome	459	Y
F081245	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255102_100105719	F081245	GGAG	MDKVTKLELENYLADEPIDPLAKMLDEIIKKGKYTK
Ga0255102_100105723	F003965	N/A	SHTPNKSAISMVGDDQFTFCEVCENNIERWYNDTDPERLPMWSDWKVSK
Ga0255102_10010574	F000684	AGG	MTLSGYTYQIGDLFTTSKTGVTGRIAGFEPMSNKVTRVSLVLANGSRRLAMVKTSK
Ga0255102_10010577	F002515	N/A	MKKTNEELRRLMELRRSNAASAVPSKKTYSRKGRKCQSQMLQLKYLQKGE