Scaffold Ga0255106_1001236

Overview

Basic Information

• Taxon OID: 3300027125
• Scaffold ID: Ga0255106_1001236
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5135
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004978	Metagenome / Metatranscriptome	416	Y
F005705	Metagenome / Metatranscriptome	392	Y
F006698	Metagenome / Metatranscriptome	366	Y
F007524	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255106_100123610	F007524	AGGA	MRKLSNTHALAINKLMLPLISTLAYIDDENDINTYKMYADDIAHNVSALCVFNNTLDAEVLHDNIMRQDTCPREHFYTVLQYIEDNKLINTNMFACR
Ga0255106_100123612	F004978	AGGAG	MITADTLEVLTDFGPQYLTRAAQDAGYRGPNFTSCKFLGITNGGQFCYMGVFQVEGGTDSTKVFLTYDHTEDRVFADVQLTDWA
Ga0255106_100123615	F005705	AGGAG	MKITIKVPKKHREHIVLFCAGTPFKQKVVNSKVKFKRQPKHKGQHND
Ga0255106_10012365	F006698	AGGAG	MRYYDELAVYERNGFDVIVDKSYEDMDPKDCFDDECFDLKEMYRDIECGNLDWFMLRVRVMVENIELSSQFLGGCLYKDAREVLTDGTAEDLIDMALTEAKRDVYRLYKKFQDISWELDAQGAVA