Scaffold Ga0255074_1003816

Overview

Basic Information

• Taxon OID: 3300027121
• Scaffold ID: Ga0255074_1003816
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2148
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008132	Metagenome / Metatranscriptome	338	Y
F014142	Metagenome / Metatranscriptome	265	Y
F019325	Metagenome / Metatranscriptome	230	Y
F066779	Metagenome / Metatranscriptome	126	Y
F105172	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_10038162	F066779	AGGA	MFSLKYKIEYNTDPAYPLSKNFGTCLGVLMNTEQDANEYLDLLALRGTILEVELVELENYKPSNRVVVATTRSWE
Ga0255074_10038164	F014142	AGGA	MNTISVIVEPSHPMASSNTKDNSIFRLANGNYISRKAYVYMVADNSLISHRHLTPNESVWVMENRVR
Ga0255074_10038165	F008132	AGG	MTKWDTIQADISDAYIHLDEEEAYNNMLDDEDDIFGFTKAIQIDHLTDEELDEVFDMFGD
Ga0255074_10038166	F105172	GGAG	MTLELNDYGLEFDTYVCYIALSWQVIIPATIALIAYKIYKRKKITK
Ga0255074_10038167	F019325	AGGTGG	MTTLNENLFSTIVHDYHNGGVKSSYGLDAYTRKELLKFLFSSKGCYCINCISKEDN