Scaffold Ga0208009_1021907

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1021907
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1419
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001043	Metagenome / Metatranscriptome	794	Y
F045058	Metagenome / Metatranscriptome	153	Y
F047650	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_10219071	F000868	AGGA	MSFLENENQMVIDAIYSDIGEQLVEDWVNSNLDEGQMYADFRFAEMSNDNYIKGRFNRHYNLTPDDQYY
Ga0208009_10219072	F000450	GGCGG	MGDRANFGFVQPNGHTVVLYGHWAGYQMLGKLADAVIAARPRWNDSSYATRIAISQLIGDQWNAETGWGLQVNEIGDNEHKIAIIDWDQQTFSLHEEAPRNDKDNKVNGMKNTPIFTQDLSAFCEKYAMERLLVV
Ga0208009_10219073	F047650	AGG	MAEDVSVVYYCDSCSVARASYLIKLLDGELAFCAHHYNKSKKALDEKAYEVIELNKTEESPKITEMAE
Ga0208009_10219074	F001043	GGA	MSDYKDGFDDGYKFAREEIIEKLSEIDINDIDSWILDRLAEMMEGNQL
Ga0208009_10219075	F045058	N/A	GLDPVAMSPLTFNIGTGSIEKVSKIRDKYNLVESYVSDYEPTGYTGR