Scaffold Ga0208009_1010923

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1010923
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2231
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F003582	Metagenome / Metatranscriptome	478	Y
F013878	Metagenome / Metatranscriptome	267	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_10109231	F080048	GAGG	MEKILCYSCNKSKNKLDAKKSSLLPINLLICESCISAKLEPRWVVILAGRSQGPD
Ga0208009_10109233	F000473	AGAAG	MFINKDKDHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKKPSMLLMDIVMYPDFLALRLYEDNFLQFEGTKKEMVIDYVTKVKRLLESYGVRCELEGKPSERVL
Ga0208009_10109235	F013878	AGG	MLNLTELGVEVFIKKAKNVTPYWDNYDLVIWKKDSSGFTNIKGMFRENSWGTAERIAVANNGIWKLPTKYVKHFK
Ga0208009_10109237	F003582	N/A	AEVEAFDEGDALDYANDIFGTDDEIKNVKVVSVKEK