NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1010236

Scaffold Ga0208009_1010236


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1010236 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2328
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F000868Metagenome / Metatranscriptome853Y
F008305Metagenome / Metatranscriptome335Y
F014250Metagenome / Metatranscriptome264Y
F045058Metagenome / Metatranscriptome153Y
F047650Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0208009_10102362F014250AGGMNETKLEPRLQKLVDLGESGTDILHGELKNLMLEAETQLDYATKAEEESEEAMDSMERRYWEGQLDALTECYILTYNLTFAINERIISRG
Ga0208009_10102364F008305AGGAGMLGYTYEDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYVSENV
Ga0208009_10102365F000868AGGAMSFLENENQMFIDATLSEIGEMLVEDWINSNLDEGELYSDWRIADMSDSNYLKGRFNLFYDLKPDDQYYLEYDEEK
Ga0208009_10102366F000450GGCGGMGDRANFGFVQPNGQTIVLYGHWAGYQMLGKLADAVIAARPRWNDSSYATRIAISQIVGDQWNAETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEWAPHNDLDNKVRGMNNDAIFTMDLSAFCEKYAMERLLVV
Ga0208009_10102367F047650AGGAMAEYVSPVYYCDSCSVARASYLIKLLDGELAFCTHHYNKSKKALDEKAYEVVELNKKEESPKLTEMAE
Ga0208009_10102369F045058N/AGLDPVAMSPLTFNIGTGSIEKVSKIRDKYNLVESYISDYEPTGYTGR
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