Basic Information | |
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Taxon OID | 3300027114 Open in IMG/M |
Scaffold ID | Ga0208009_1010236 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2328 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000450 | Metagenome / Metatranscriptome | 1126 | Y |
F000868 | Metagenome / Metatranscriptome | 853 | Y |
F008305 | Metagenome / Metatranscriptome | 335 | Y |
F014250 | Metagenome / Metatranscriptome | 264 | Y |
F045058 | Metagenome / Metatranscriptome | 153 | Y |
F047650 | Metagenome / Metatranscriptome | 149 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208009_10102362 | F014250 | AGG | MNETKLEPRLQKLVDLGESGTDILHGELKNLMLEAETQLDYATKAEEESEEAMDSMERRYWEGQLDALTECYILTYNLTFAINERIISRG |
Ga0208009_10102364 | F008305 | AGGAG | MLGYTYEDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYVSENV |
Ga0208009_10102365 | F000868 | AGGA | MSFLENENQMFIDATLSEIGEMLVEDWINSNLDEGELYSDWRIADMSDSNYLKGRFNLFYDLKPDDQYYLEYDEEK |
Ga0208009_10102366 | F000450 | GGCGG | MGDRANFGFVQPNGQTIVLYGHWAGYQMLGKLADAVIAARPRWNDSSYATRIAISQIVGDQWNAETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEWAPHNDLDNKVRGMNNDAIFTMDLSAFCEKYAMERLLVV |
Ga0208009_10102367 | F047650 | AGGA | MAEYVSPVYYCDSCSVARASYLIKLLDGELAFCTHHYNKSKKALDEKAYEVVELNKKEESPKLTEMAE |
Ga0208009_10102369 | F045058 | N/A | GLDPVAMSPLTFNIGTGSIEKVSKIRDKYNLVESYISDYEPTGYTGR |
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