Scaffold Ga0208009_1001824

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1001824
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5966
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (35.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004314	Metagenome / Metatranscriptome	444	Y
F023571	Metagenome / Metatranscriptome	209	Y
F050990	Metagenome / Metatranscriptome	144	Y
F054003	Metagenome / Metatranscriptome	140	Y
F058099	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_10018241	F004314	N/A	MYDDYDFDYTYTNDCVDLDEYHTYDLDEDYARDGQDYESLAYRHYA
Ga0208009_100182412	F054003	GAGG	MTETLRQYHFTDEQIDFILDLVRNNAQYEEDEDREFMEELANQIEDQIVNHPDND
Ga0208009_100182413	F058099	N/A	MTKELLIAQLRLGKNGNDLLSILDALHNGMDSGESSQDHVPTLDEIEF
Ga0208009_100182419	F023571	N/A	MNFSALNFSDHSVIKGGTRAEYTFRNYWTISVVSGPEGSGLYGDIQHDTFEVAVMRPNGNMLEDVIRWQTPVQITTMMRLIAML
Ga0208009_10018249	F050990	N/A	MIPDTYSFSGDAVTVLGLVGIISTGIILVVAYTRYWNSPLRK