Scaffold Ga0208009_1001182

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1001182
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7421
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100118211	F007747	AGGAG	MNDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKQLKKDQEAVIEYVIVKALKGFAKK
Ga0208009_10011826	F016963	GGAGG	VIEILPEQSTQEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRSGL
Ga0208009_10011827	F005502	AGGAG	MRTLLSILALLGLTTTKLSNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTKLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK