Scaffold Ga0208009_1000832

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1000832
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8783
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F000980	Metagenome / Metatranscriptome	814	Y
F002071	Metagenome / Metatranscriptome	596	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003690	Metagenome / Metatranscriptome	473	Y
F004840	Metagenome / Metatranscriptome	421	Y
F005177	Metagenome / Metatranscriptome	409	Y
F005531	Metagenome / Metatranscriptome	397	Y
F006984	Metagenome / Metatranscriptome	360	Y
F009143	Metagenome / Metatranscriptome	322	Y
F049621	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_10008321	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNAPFTLAQETFGMGDISTMGFPTKIEQVSYSNPVFAFFNIHSYKDDGITDEEYACQPSRGDIDIQNDPDWFRKSVEFAKT
Ga0208009_100083211	F002071	AGGA	MTNATLEVGQTYTTTTSGITGVIKAVDNHPSGVNRILLDVEGKERWTSATAN
Ga0208009_100083213	F002245	AGG	MSNLIKVPHTITFEAIINLDTIPANLLPRLIALDEKTMTEMCKEATLHALAQSNVLKTANEFNTWAEMTIKEGN
Ga0208009_100083214	F049621	AGGAG	MAELNYFNALINSVVGDQDQKKAAKEYLAEIDPDIWGQEE
Ga0208009_100083218	F004840	GGA	MYKLTCAYDSNAPHWSAEYENEFGAWENFFRFTDWGSAHEYSTVNLSTPTGKMYTKVFYRNGMVSVK
Ga0208009_10008322	F000450	AGGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHQMLANLAEAVIKAQGRWSDPSYATRITISHMIGEGWAMETGWGLHVNEIGDNEHKIAVVDFQQQTFSLHEEAPYSDESNKVRGMKNEAIFTQDLSNFCEKYSDQLVRV
Ga0208009_100083225	F003690	GGA	MITDGFILEINSDYGLELDSFLGAIYLPWHTIAITTALLIAYKIYKRKKNK
Ga0208009_100083226	F009143	GAGG	MMSKWDTIQADVADAYVYLEEEEAYNKALAEGLDLRLSEYEEEEMSALTLDWDN
Ga0208009_100083227	F005531	N/A	TLWQGSQLLAVNQKASKPEEILAVIAELNKLGKGFTYNIREVEVK
Ga0208009_10008326	F000980	N/A	MTKYEKYTWVCTGDCDALIEYTIKDGFGWPAGEMNLTCRCNSNCTLLSVEDATIPYTDTPLPTKEEKMEDATISTTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNGVLNGKIDAVKEIICEAYADSGDQDTLREIAEALSIELIKEVEWTASIEVSGTYSYNILENEYDLDLESEITDAIFAESNNGNIEIGDQEVCNVREA
Ga0208009_10008329	F005177	AGGA	MKNRYRVEIYDEVKANDLTIYSEQGVDKEYLTELVFSNMRRFNGTIRAYVYDNLKKKKTTALLLPMEFIPKKTELTNLVG