NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209281_1064002

Scaffold Ga0209281_1064002


Overview

Basic Information
Taxon OID3300027111 Open in IMG/M
Scaffold IDGa0209281_1064002 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)554
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001430Metagenome696Y
F038571Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0209281_10640021F038571N/AMLKIKILPISFEIVTDECAENKVLSITFKIVTDKYAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_10640022F001430N/AMLEIKILPITFKKVTNECAENKVMPITFEIVTDEYVENKNLAD

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