3300027111: Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027111
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114676 | Gp0119671 | Ga0209281
• Sample Name: Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 234796731
• Sequencing Scaffolds: 59
• Novel Protein Genes: 92
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	57
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001430	Metagenome	696	Y
F007794	Metagenome	344	Y
F012754	Metagenome	277	Y
F021933	Metagenome	216	Y
F024731	Metagenome	204	Y
F038571	Metagenome	165	Y
F040493	Metagenome	161	N
F044940	Metagenome	153	Y
F067455	Metagenome	125	Y
F067456	Metagenome	125	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209281_1010709	Not Available	2086
Ga0209281_1014974	Not Available	1628
Ga0209281_1017412	Not Available	1458
Ga0209281_1021610	Not Available	1242
Ga0209281_1022987	Not Available	1188
Ga0209281_1025162	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1112
Ga0209281_1026238	Not Available	1079
Ga0209281_1030013	Not Available	978
Ga0209281_1031648	Not Available	942
Ga0209281_1034492	Not Available	884
Ga0209281_1035721	Not Available	863
Ga0209281_1036805	Not Available	844
Ga0209281_1039286	Not Available	804
Ga0209281_1040136	Not Available	791
Ga0209281_1040138	Not Available	791
Ga0209281_1040295	Not Available	789
Ga0209281_1041115	Not Available	777
Ga0209281_1041863	Not Available	767
Ga0209281_1041995	Not Available	765
Ga0209281_1043100	Not Available	750
Ga0209281_1043638	Not Available	743
Ga0209281_1045719	Not Available	717
Ga0209281_1047952	Not Available	692
Ga0209281_1049359	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	677
Ga0209281_1049579	Not Available	675
Ga0209281_1049965	Not Available	671
Ga0209281_1050065	Not Available	670
Ga0209281_1051660	Not Available	654
Ga0209281_1051994	Not Available	651
Ga0209281_1052569	Not Available	646
Ga0209281_1053186	Not Available	640
Ga0209281_1054240	Not Available	630
Ga0209281_1056329	Not Available	612
Ga0209281_1056367	Not Available	612
Ga0209281_1056497	Not Available	611
Ga0209281_1056870	Not Available	608
Ga0209281_1057110	Not Available	606
Ga0209281_1059126	Not Available	590
Ga0209281_1060419	Not Available	580
Ga0209281_1062875	Not Available	562
Ga0209281_1063084	Not Available	560
Ga0209281_1063697	Not Available	556
Ga0209281_1063698	Not Available	556
Ga0209281_1064002	Not Available	554
Ga0209281_1064276	Not Available	552
Ga0209281_1064721	Not Available	549
Ga0209281_1064730	Not Available	549
Ga0209281_1064731	Not Available	549
Ga0209281_1065924	Not Available	541
Ga0209281_1066045	Not Available	540
Ga0209281_1067422	Not Available	531
Ga0209281_1068537	Not Available	524
Ga0209281_1068875	Not Available	522
Ga0209281_1069035	Not Available	521
Ga0209281_1069380	Not Available	519
Ga0209281_1070200	Not Available	514
Ga0209281_1070545	Not Available	512
Ga0209281_1072455	Not Available	501
Ga0209281_1072456	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209281_1010709	Ga0209281_10107094	F001430	MLKIKILPITFEIVTDECAENKVLSITFEIVTDEYAENKNLADYFLNSKRRMCRK
Ga0209281_1014974	Ga0209281_10149741	F001430	MTNMLKIKILPITFEIVTDECAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1014974	Ga0209281_10149742	F001430	MLKIKILPITFEIVTDECAENKVLPITFKIVTNKYAENKNLSDYF
Ga0209281_1014974	Ga0209281_10149743	F001430	MLKIKILPITIEIVTDECAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1017412	Ga0209281_10174121	F001430	ITFEIVTDECAENKVLPITFNIVTDKYAENNNLADYF
Ga0209281_1017412	Ga0209281_10174122	F001430	MLKIKILPINFELVTDDCAENKVLPITFVTVTDECAENKNLADYF
Ga0209281_1017412	Ga0209281_10174123	F001430	MLKIKILPITFEVVTDECAENKVLPITFKIVTDEYDENKNLVDYF
Ga0209281_1021610	Ga0209281_10216101	F001430	MLKIKILPITFEIVTDECAENKILPITFELVTDEYVENKNLVDYF
Ga0209281_1022987	Ga0209281_10229871	F001430	MLKLKILPITFEIGTDECAENIVLPINSKIVTDKYAKNKNLADYF
Ga0209281_1025162	Ga0209281_10251621	F021933	VEADYDPFWIGAAGPPGREGGCYFWFTIASEPASAQKDTSKVGLFDRGVLLIPYEAILRSICPSEKALEVRASVERSESYALGKRFAVAKLTASLSPRAKLRPLLLVTSGRLFRHP
Ga0209281_1026238	Ga0209281_10262381	F001430	MLKIKILPITFEIVTKEYAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1030013	Ga0209281_10300132	F067456	VVKKTIHMSITNHRGKDDNTTKIKLSNTNYRGKDDKTRKIKLSNTNYRGKDDNKTVYSRPPW
Ga0209281_1030013	Ga0209281_10300133	F067456	MVKMTIKEIKLSNTNYRGKDDDTRKINMSITNYCGKDDNTRMITLSNTNYHVKDDNTRNI
Ga0209281_1031648	Ga0209281_10316481	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYIENKNLVDYF
Ga0209281_1031648	Ga0209281_10316482	F001430	MLKIKILPITFEIVTDEFAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1031648	Ga0209281_10316483	F038571	MLKIKILPITFEIVTNEYAEHKVLPITFEIVTDEYIENKNLVDYFKTVTDKYAENKNLADYF
Ga0209281_1034492	Ga0209281_10344921	F001430	MLKIKILAITFEIVTDECAENKVLPISFEIVTDEYAENKNLADYF
Ga0209281_1034492	Ga0209281_10344922	F001430	MLKIKILPINFEIVTDECAENKVLPIAFEIVTDECDENKSYRLPLK
Ga0209281_1034492	Ga0209281_10344923	F001430	MLKIKILAITFKIVTDECAENKVLPISFEIVTDEYAENKNLADYF
Ga0209281_1035721	Ga0209281_10357211	F001430	MLKINILPITFKIVTNECTENKVLPITFDIVTDEYGENKNLADFF
Ga0209281_1036805	Ga0209281_10368052	F001430	MLKIKILPITFEIVTDECTENKVFPITFEIVTDKYAENKNLSEFFRNSNG
Ga0209281_1036805	Ga0209281_10368053	F001430	MLKIKIFPNSFEIVTDECAENKVLPITFEIVTEEYAENKNLADYF
Ga0209281_1036805	Ga0209281_10368054	F001430	MLKIKILPITFEIVTDECAENIVLPITFEIVTDEYAENKNLADYF
Ga0209281_1036805	Ga0209281_10368055	F001430	MLKIKIFPITFEMVTDECAENKVLPITFEIVTDEYAENKNLAD
Ga0209281_1039021	Ga0209281_10390211	F007794	YKGGECKFYFSREEIVYFNIRGEGSVFQASLRGGECNLLFFLTQVFSI
Ga0209281_1039286	Ga0209281_10392862	F001430	MNMLKIKILLITFVIVTDECAENKVLPITFEIVTDGYAENKNLADYF
Ga0209281_1039286	Ga0209281_10392863	F038571	LPITFEIVTDECAENKVLPITFELVTDECAENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1039286	Ga0209281_10392864	F038571	LPITFEIVTDECAENKILPIAFEILTDECAENKVLPITFKIVTDKYAQNKNLADYF
Ga0209281_1040136	Ga0209281_10401361	F001430	MLKIKILPINFEIVTDECAENKVLPIAFEIVTDEYVENKNLVDYF
Ga0209281_1040138	Ga0209281_10401381	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVNDEYVENKNLVDYF
Ga0209281_1040295	Ga0209281_10402952	F001430	MLKIKILPINFEIVTDECAENKVFPIAFEILNDEYVENKNLVDYF
Ga0209281_1040295	Ga0209281_10402953	F001430	MPITFKIVTNECTENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1041115	Ga0209281_10411152	F038571	MLKIKIFPITFEIVTDEYAEKKILPITFEIVTDECAENKVMPLTFKIVTDKYAENKNLGDYF
Ga0209281_1041863	Ga0209281_10418632	F001430	MNLLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYVENKNLV
Ga0209281_1041995	Ga0209281_10419952	F001430	MLKIKVLPITFEIVTNKCAQNKVLPITFEIVTDEYVENKNLVDYI
Ga0209281_1043100	Ga0209281_10431001	F001430	MLEIKILPINFKKVTNECAENNVLPITFEIVNDEYAENKNLADYF
Ga0209281_1043100	Ga0209281_10431003	F038571	MLKIKILPITFEIVTDECAENKVLPITFEIVTDECAENKVLPITFEIVTDEYVENKNLADYF
Ga0209281_1043638	Ga0209281_10436381	F040493	PNMLKSEFLDAELLAITSEVQRLVEQRRSPTLHLVYQEQWDSLQTRASNLLSFLSQKCNKIHEAAAMHILSLVHSVEEDQDNMLLTDTPFFQKSEYFSRERRLLKQYRQSAQKIREEHKAREEELLQKQLALEAAMKEKDDLIARLMNPQPQP
Ga0209281_1045719	Ga0209281_10457193	F001430	MLKIKILPITFEIVTDECAENKVLPLTFKIVTDKYAENKNLADYF
Ga0209281_1047952	Ga0209281_10479521	F001430	MLKIKILPITFEIVTNEYVENKVLPITFEIVTDEYVLKINLADYF
Ga0209281_1047952	Ga0209281_10479522	F001430	MPITFEIVTENMLKIKILSITYKAVTDKYAEIIILPITFEIVTDEYAENKNLADYF
Ga0209281_1047952	Ga0209281_10479523	F001430	MLKIKILPITFEIVTDEFPENKVLPITFEIVIDEYVENKNLVDYF
Ga0209281_1049359	Ga0209281_10493591	F044940	MALRTLFKSEGTEKEGEEKNSSSTQAKRGRREKSSLTTQENFWCVLKCGM
Ga0209281_1049579	Ga0209281_10495791	F038571	MKILPITFEIVTDECAENKILPIAFEIITDECAEKKVLPITFKIVTDKYAENKNLANYFLNSNRPMC
Ga0209281_1049579	Ga0209281_10495792	F001430	MLKIKIFPITFEVVTDECAENKVLPITFKIVTDEYAENKNLVDYF
Ga0209281_1049965	Ga0209281_10499651	F001430	NMLKIKILPITFEIVTDESAENKVLPITFEIVTDEYVENKNLADYF
Ga0209281_1049965	Ga0209281_10499652	F001430	MLKIKILPITFEIVTDEYAENKVLPITFEIVTDEYVENKNLADYF
Ga0209281_1050065	Ga0209281_10500651	F001430	NKVLPITFEIVTDECAENKVLPITFKIVTDKYAKNKNLADYF
Ga0209281_1051660	Ga0209281_10516601	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYVLKINLVDYF
Ga0209281_1051994	Ga0209281_10519941	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYVENK
Ga0209281_1052569	Ga0209281_10525691	F001430	MLKIKILPITFEIVTDECAENKVLPSTFEIVTDEYVENKNLVDYF
Ga0209281_1052569	Ga0209281_10525692	F001430	MLKIKILSITFEIVTNEYAENKVLPITFEIVTDKYVENKNLVDYF
Ga0209281_1053186	Ga0209281_10531861	F012754	IERMLAERKREQEAIKAARDEKLQSIGIDPSDDYFMEKLAEVKQLAESAQKQVVKEAAEMLKQIPEASEAVTYVDASESASIASIPEAPVQVTQPSNLPLIIPSPVPLSNDSDIDDVPISQRMRKLSKPSPKPQQTTPQLQLQAEQSSAAAECTEDPEEPLTSNLPQCDSPSNLFSLERHLGGEITKTPEKATKSVPQKIELVHQSEPVAET
Ga0209281_1054240	Ga0209281_10542401	F012754	RMAKEHTDKLLADKKQKEAEYLASRDAKIQSLGLENYDEYFVQKIAEVRQIAGLVEQQVVEEAAEMLEQIPEASVADTSVAASESASIALISEASAQVIQISNLPLIIPSPVSPSNDSDLDDVPIGQRMRKLSKPSPQPQQTTPQLPLQAEQSSAATECTEDPEDPPTFDLPQCDSPSNLFSLERHLGGEITKTPEKATKSVPQKIELV
Ga0209281_1056329	Ga0209281_10563291	F001430	MNMLEIKILPITFKKVTNECAENKVLPITFEIVTDEYVENKNLADYF
Ga0209281_1056367	Ga0209281_10563671	F001430	MNMLKIKIFPITFEIVTDECAENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1056367	Ga0209281_10563672	F001430	MLKIKILPITFEIVTDECAENKVLPITFEIVTDEYAENKNLSDYFRNSN
Ga0209281_1056497	Ga0209281_10564971	F001430	MLKIKILPITFEIVTDECTENKVLPITFEIVTDKYAENKNLSDYFRNSN
Ga0209281_1056497	Ga0209281_10564972	F001430	MLKIKIFPITFEIVTDECAENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1056497	Ga0209281_10564973	F001430	MLKIKILPITFEIVTDQCTENKVLPITFEIVTDKYAENKNLSDYF
Ga0209281_1056870	Ga0209281_10568701	F001430	MLKIKILPITLEIVTDEYVENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1057110	Ga0209281_10571102	F038571	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDECAENKVLPITFEIVTDEYAENKVLPITFEI
Ga0209281_1059126	Ga0209281_10591261	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEILNDEYVENKNLVDYF
Ga0209281_1060419	Ga0209281_10604193	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYVL
Ga0209281_1062732	Ga0209281_10627321	F067455	MIFGQNLINDSCRQVEKTQGQIVGTKMGSTAGNDQNTLLCDFMQKMME
Ga0209281_1062875	Ga0209281_10628752	F001430	MLKIKILPITFEIVTDECAENKVLPITFKIVTDEYAENKNLVDYF
Ga0209281_1063084	Ga0209281_10630841	F001430	LKIKILPITFEIVTDECTENKVFPITFEIVTDKYAENKNLSEYFRNSNG
Ga0209281_1063084	Ga0209281_10630842	F001430	MLKIKIFPNTFEIVTDECAENKVLPITFEIVTEEYAENKNLADYF
Ga0209281_1063697	Ga0209281_10636972	F038571	MLKIKILPITFEIVTDECAENKILSIAFEILTDECAENKVLPITFKIVTDLLLK
Ga0209281_1063697	Ga0209281_10636973	F001430	TFVIVTDEYAEKKILPNTFEIVTDECAENKNLVDYF
Ga0209281_1063698	Ga0209281_10636981	F001430	MLKIKILPITFEIVTDECAENKVLPITFEIVTDEYVEN
Ga0209281_1064002	Ga0209281_10640021	F038571	MLKIKILPISFEIVTDECAENKVLSITFKIVTDKYAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1064002	Ga0209281_10640022	F001430	MLEIKILPITFKKVTNECAENKVMPITFEIVTDEYVENKNLAD
Ga0209281_1064276	Ga0209281_10642761	F024731	MGSLNLSLDAKHDMXTYLVSYSVKXKYWNVPCRENEILTYMVTSLINMKVELVPXFKTRYLNLFGFKFAKMKVLKXPLSRSMINGKFEHVPXRPVLQTXYVNLFGFVFGKMKVLDXPVSRKXDFGLYAYKFDKXDIXTCPLIXNIICEPIWFCIP
Ga0209281_1064721	Ga0209281_10647213	F001430	MLKIKILPITFEIVTDECAENKVLPITFKIVTDKYAENKNL
Ga0209281_1064730	Ga0209281_10647303	F001430	MLKIKILPITFEIVTDECAENKVLPITFKIVTDEYAENKNLGDYF
Ga0209281_1064731	Ga0209281_10647311	F001430	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYVLRINLADYF
Ga0209281_1065462	Ga0209281_10654621	F038571	MLKIKIFPITFEIVTDECAENKVLPITFEIVTDECVENKVLPITSKIVTDKYAKNKNLADYF
Ga0209281_1065924	Ga0209281_10659241	F001430	MLKIKILPITFEIVTDEYAENKILPIAFEIITDECAENKVL
Ga0209281_1065924	Ga0209281_10659243	F001430	MLKIKILPITFEIVTDECAENKVLSIAYEIVTDEYVENKNLVDYF
Ga0209281_1065925	Ga0209281_10659251	F038571	MLKIKILPITFEIVTNEYAENKVLPITFEIVTDEYIENKNLVDYFKTVTDKYAENKNLADYF
Ga0209281_1066045	Ga0209281_10660452	F001430	MLEIKILPITFKKVTNECAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1067422	Ga0209281_10674222	F001430	MVKIKILPITFKIVTDECAENKVLTITFEIVTDEYAENKSCRLPLK
Ga0209281_1068537	Ga0209281_10685371	F001430	MLEIKILPISYEIVTDECAENKVLSITFEILTDEYVENKNLVD
Ga0209281_1068875	Ga0209281_10688751	F038571	MQKIKILPIAFEIITDECAENKVLPITFEIVTDECAENKVLPITFEIVTDEYAENKNLADYF
Ga0209281_1069035	Ga0209281_10690352	F001430	MLKIKILPITFEIVTDECAENKVLPITFEIVTDEYVENKNLVDYL
Ga0209281_1069380	Ga0209281_10693801	F038571	MLKINILPISFEIVTDECAENKVLPITFKIVTNECTENKVLPITFDIVTDEYAENKNLADYF
Ga0209281_1070200	Ga0209281_10702002	F001430	MLKIKILPITFEIVTDECAENKVLPITFEIVTDEYVENKNLVDYF
Ga0209281_1070545	Ga0209281_10705451	F001430	NMLKIKILPITFEIVTDKCAENKVLPITFEIVTDEYVENKNLADYF
Ga0209281_1072455	Ga0209281_10724551	F001430	MLKIKILPITFEIVTDECAENKVLPITFEIVTDEYVENRNLVDYF
Ga0209281_1072456	Ga0209281_10724561	F001430	MLKIKILPITFEIVTNECAENKVLPITFGIVTDEYVENKNLVDLLLI
Ga0209281_1072456	Ga0209281_10724562	F001430	MLKIKILPITFKIVTNECTENKVLLITFEIVTDEYVENKNLVDYL