Scaffold Ga0208366_1012138

Overview

Basic Information

• Taxon OID: 3300027073
• Scaffold ID: Ga0208366_1012138
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 916
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004392	Metagenome / Metatranscriptome	440	N
F066496	Metagenome / Metatranscriptome	126	N
F082398	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208366_10121381	F066496	AGGAG	MSEKNQIVVVLIVALFLGAFVDRITALKIVAGVVLLWTLQNQPVVFECIRKLF
Ga0208366_10121382	F004392	AGGA	MPVNGPETIADSKPSQPVPSEGRSVRAARNAKPAVGRGASTRRRRDRQESSQTSGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS
Ga0208366_10121383	F082398	N/A	KWFDRYDVLMILIVIVIYSSVSGLLRRAGLSEGTVGILPLILFAAGILLKPRAVQIIERRRKDRTAEPHDGRSHMDSGDKQEIARKETVERCQ