NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207839_1009185

Scaffold Ga0207839_1009185


Overview

Basic Information
Taxon OID3300027010 Open in IMG/M
Scaffold IDGa0207839_1009185 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1179
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039249Metagenome164Y
F097838Metagenome104Y
F100922Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0207839_10091852F097838GAGGMRDALTGIGLVTFGTIAVVALCIGVCALADVVIRVVA
Ga0207839_10091853F100922AGGMTEAVIFVAAILTLAGAILATIYFIVRDAQPQPQRQSYRRHRPWNA
Ga0207839_10091854F039249N/ADSEHLIPLALCSGRICAMKNFIARFVTDQSGAVDFEDGLTVVSLIIGFICAIALMYSTVVQLYAAVFGMLPG

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