Metagenome Family F097838

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097838
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	39 residues
Representative Sequence	MRDAITGIGLVAFGTIAVLALCIGVCALADAVIRVVA
Number of Associated Samples	58
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	59.62 %
% of genes near scaffold ends (potentially truncated)	18.27 %
% of genes from short scaffolds (< 2000 bps)	85.58 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (84.615 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.808 % of family members)
Environment Ontology (ENVO)	Unclassified (51.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.308 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.85% β-sheet: 0.00% Coil/Unstructured: 46.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04966	OprB	1.92
PF00196	GerE	1.92
PF04392	ABC_sub_bind	1.92
PF10994	DUF2817	1.92
PF13356	Arm-DNA-bind_3	0.96
PF03457	HA	0.96
PF04226	Transgly_assoc	0.96
PF04773	FecR	0.96
PF12849	PBP_like_2	0.96
PF05235	CHAD	0.96
PF00536	SAM_1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.92
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	1.92
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.96
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.96
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
All Organisms	root	All Organisms	15.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
cellular organisms	root	All Organisms → cellular organisms	15.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	15.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.58 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.65 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.81 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.96 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.96 %
Aurantimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae	0.96 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.96 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.96 %
Aureimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas	0.96 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.96 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Aureimonas endophytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas → Aureimonas endophytica	0.96 %
Agrobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium	0.96 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.96 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Agrobacterium tumefaciens complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium tumefaciens complex	0.96 %
Aureimonas endophytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas → Aureimonas endophytica	0.96 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.96 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.62 %
Agrobacterium tumefaciens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium tumefaciens complex → Agrobacterium tumefaciens	0.96 %
Aureimonas endophytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas → Aureimonas endophytica	0.96 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.96 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10167470	Not Available	524	Open in IMG/M
3300005332\|Ga0066388_100176149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2743	Open in IMG/M
3300005332\|Ga0066388_106493065	Not Available	590	Open in IMG/M
3300005332\|Ga0066388_108639821	Not Available	506	Open in IMG/M
3300005764\|Ga0066903_100149495	Not Available	3350	Open in IMG/M
3300005764\|Ga0066903_100384352	All Organisms → cellular organisms → Bacteria → Proteobacteria	2297	Open in IMG/M
3300005764\|Ga0066903_100671928	Not Available	1817	Open in IMG/M
3300005764\|Ga0066903_100936752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1573	Open in IMG/M
3300005764\|Ga0066903_101127127	Not Available	1449	Open in IMG/M
3300005764\|Ga0066903_101306277	Not Available	1356	Open in IMG/M
3300005764\|Ga0066903_101750195	Not Available	1185	Open in IMG/M
3300005764\|Ga0066903_102745787	Not Available	955	Open in IMG/M
3300005764\|Ga0066903_103108866	Not Available	898	Open in IMG/M
3300005764\|Ga0066903_103734676	Not Available	819	Open in IMG/M
3300005764\|Ga0066903_104077903	Not Available	783	Open in IMG/M
3300005764\|Ga0066903_106834883	Not Available	593	Open in IMG/M
3300005764\|Ga0066903_107603332	Not Available	558	Open in IMG/M
3300006059\|Ga0075017_101502496	Not Available	531	Open in IMG/M
3300006174\|Ga0075014_100779043	Not Available	563	Open in IMG/M
3300006755\|Ga0079222_10123570	Not Available	1415	Open in IMG/M
3300009792\|Ga0126374_10259733	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300010048\|Ga0126373_10141000	Not Available	2280	Open in IMG/M
3300010048\|Ga0126373_10355407	Not Available	1478	Open in IMG/M
3300010048\|Ga0126373_10748216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas → Aureimonas endophytica	1038	Open in IMG/M
3300010048\|Ga0126373_10868062	Not Available	966	Open in IMG/M
3300010358\|Ga0126370_11853296	Not Available	585	Open in IMG/M
3300010359\|Ga0126376_10539803	Not Available	1089	Open in IMG/M
3300010360\|Ga0126372_10869616	Not Available	901	Open in IMG/M
3300010360\|Ga0126372_11758257	Not Available	662	Open in IMG/M
3300010366\|Ga0126379_12147656	Not Available	660	Open in IMG/M
3300010376\|Ga0126381_100119599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium tumefaciens complex → Agrobacterium tumefaciens	3406	Open in IMG/M
3300010376\|Ga0126381_103519012	Not Available	615	Open in IMG/M
3300010376\|Ga0126381_103891570	Not Available	582	Open in IMG/M
3300012971\|Ga0126369_10585673	Not Available	1184	Open in IMG/M
3300012971\|Ga0126369_11533010	Not Available	756	Open in IMG/M
3300012971\|Ga0126369_13547250	Not Available	511	Open in IMG/M
3300016270\|Ga0182036_10501332	Not Available	961	Open in IMG/M
3300016270\|Ga0182036_11575125	Not Available	553	Open in IMG/M
3300016294\|Ga0182041_10107223	Not Available	2067	Open in IMG/M
3300016319\|Ga0182033_10297820	Not Available	1330	Open in IMG/M
3300016319\|Ga0182033_10541436	Not Available	1005	Open in IMG/M
3300016319\|Ga0182033_12047286	Not Available	522	Open in IMG/M
3300016357\|Ga0182032_10722365	Not Available	837	Open in IMG/M
3300016371\|Ga0182034_10696500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	863	Open in IMG/M
3300016387\|Ga0182040_10270876	Not Available	1285	Open in IMG/M
3300016422\|Ga0182039_10808619	Not Available	832	Open in IMG/M
3300016422\|Ga0182039_12243525	Not Available	504	Open in IMG/M
3300016445\|Ga0182038_11463896	Not Available	613	Open in IMG/M
3300017937\|Ga0187809_10330992	Not Available	567	Open in IMG/M
3300017959\|Ga0187779_10744657	Not Available	665	Open in IMG/M
3300017973\|Ga0187780_10329598	Not Available	1076	Open in IMG/M
3300017974\|Ga0187777_10585814	Not Available	785	Open in IMG/M
3300018058\|Ga0187766_10048433	Not Available	2494	Open in IMG/M
3300018060\|Ga0187765_10003951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6170	Open in IMG/M
3300021402\|Ga0210385_11119357	Not Available	605	Open in IMG/M
3300021560\|Ga0126371_10177202	All Organisms → cellular organisms → Bacteria	2213	Open in IMG/M
3300021560\|Ga0126371_10184829	All Organisms → cellular organisms → Bacteria	2171	Open in IMG/M
3300021560\|Ga0126371_10198755	Not Available	2099	Open in IMG/M
3300021560\|Ga0126371_10785249	Not Available	1099	Open in IMG/M
3300027010\|Ga0207839_1009185	Not Available	1179	Open in IMG/M
3300027680\|Ga0207826_1021367	Not Available	1784	Open in IMG/M
3300031543\|Ga0318516_10561995	Not Available	653	Open in IMG/M
3300031545\|Ga0318541_10220860	Not Available	1050	Open in IMG/M
3300031545\|Ga0318541_10514668	Not Available	670	Open in IMG/M
3300031546\|Ga0318538_10136506	Not Available	1289	Open in IMG/M
3300031564\|Ga0318573_10805099	Not Available	505	Open in IMG/M
3300031573\|Ga0310915_10106065	All Organisms → cellular organisms → Bacteria	1904	Open in IMG/M
3300031573\|Ga0310915_10480287	Not Available	883	Open in IMG/M
3300031573\|Ga0310915_10636962	Not Available	754	Open in IMG/M
3300031573\|Ga0310915_10800217	Not Available	663	Open in IMG/M
3300031573\|Ga0310915_10828470	Not Available	650	Open in IMG/M
3300031573\|Ga0310915_11184160	Not Available	529	Open in IMG/M
3300031681\|Ga0318572_10802093	Not Available	560	Open in IMG/M
3300031736\|Ga0318501_10594295	Not Available	607	Open in IMG/M
3300031753\|Ga0307477_11090352	Not Available	521	Open in IMG/M
3300031798\|Ga0318523_10508122	Not Available	596	Open in IMG/M
3300031821\|Ga0318567_10875126	Not Available	509	Open in IMG/M
3300031833\|Ga0310917_10033580	All Organisms → cellular organisms → Bacteria → Proteobacteria	3052	Open in IMG/M
3300031879\|Ga0306919_10351210	Not Available	1126	Open in IMG/M
3300031897\|Ga0318520_10229846	Not Available	1102	Open in IMG/M
3300031910\|Ga0306923_10021682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6808	Open in IMG/M
3300031910\|Ga0306923_10117051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3019	Open in IMG/M
3300031912\|Ga0306921_10817817	Not Available	1063	Open in IMG/M
3300031912\|Ga0306921_11856055	Not Available	646	Open in IMG/M
3300031941\|Ga0310912_11429270	Not Available	522	Open in IMG/M
3300031942\|Ga0310916_10589733	Not Available	945	Open in IMG/M
3300031945\|Ga0310913_10817443	Not Available	657	Open in IMG/M
3300031945\|Ga0310913_10838225	Not Available	648	Open in IMG/M
3300031946\|Ga0310910_11014401	Not Available	648	Open in IMG/M
3300031959\|Ga0318530_10488259	Not Available	512	Open in IMG/M
3300032035\|Ga0310911_10222561	Not Available	1077	Open in IMG/M
3300032035\|Ga0310911_10310543	Not Available	908	Open in IMG/M
3300032035\|Ga0310911_10365889	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	833	Open in IMG/M
3300032041\|Ga0318549_10311082	Not Available	710	Open in IMG/M
3300032059\|Ga0318533_10263958	Not Available	1245	Open in IMG/M
3300032059\|Ga0318533_10677568	Not Available	757	Open in IMG/M
3300032076\|Ga0306924_10361322	Not Available	1664	Open in IMG/M
3300032091\|Ga0318577_10295673	Not Available	775	Open in IMG/M
3300032261\|Ga0306920_100017086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10010	Open in IMG/M
3300032261\|Ga0306920_100883426	Not Available	1308	Open in IMG/M
3300032261\|Ga0306920_100905520	Not Available	1289	Open in IMG/M
3300032261\|Ga0306920_100995782	Not Available	1221	Open in IMG/M
3300032261\|Ga0306920_102018237	Not Available	807	Open in IMG/M
3300032261\|Ga0306920_102461954	Not Available	717	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.12%
Aquatic	Environmental → Aquatic	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.12%
Sediment	Environmental → Aquatic → Sediment	1.92%
Freshwater	Environmental → Aquatic → Freshwater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.00%
Loam	Environmental → Terrestrial → Soil → Loam	17.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.23%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.31%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027010	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_101674701	3300000597	Forest Soil	MEAPIRDAMTGIGLIAFGTIAMLALCIGVCALADAIVRVVA
Ga0066388_1001761492	3300005332	Tropical Forest Soil	MEAPARDAVTGIGLIVFGTIAVIALCIGVCALADAVIRIVA*
Ga0066388_1064930651	3300005332	Tropical Forest Soil	MEPPMRDGIIGIGLVAFGTIAVLALCIGVCALADAIIRVVA*
Ga0066388_1086398211	3300005332	Tropical Forest Soil	MEAPMRDAITGIGLVAFGAIAVLAVCIGVCALADAVIRVVA*
Ga0066903_1001494955	3300005764	Tropical Forest Soil	MESLRDAINGIGLVAFGTIAVLALCIGVCALADAVSRIAA*
Ga0066903_1003843525	3300005764	Tropical Forest Soil	MRDAITGVGLVAFGTIAVLALCIGVCALADAIIRVVV*
Ga0066903_1006719283	3300005764	Tropical Forest Soil	MRDAITGIGLVAFGTIAVLALCIGVCALADAVIRVVA*
Ga0066903_1009367523	3300005764	Tropical Forest Soil	MRDGITGIGLVAFGTIAVLALCIGVCALTDAIIRVVA*
Ga0066903_1011271273	3300005764	Tropical Forest Soil	MRDAITGIGLVAFGTIAVLALCIGVCALTEAVIGLVA*
Ga0066903_1013062773	3300005764	Tropical Forest Soil	MEAPMRDAITGVGLVAFGTIAVLALCIGVCAVADAVIRVVA*
Ga0066903_1017501953	3300005764	Tropical Forest Soil	MKDAITGVGLVAFGTIAVLTLCIGVCALADAVIRVVA*
Ga0066903_1027457872	3300005764	Tropical Forest Soil	MRDAITGIGLVAFGTIAVLALCIGVCVLADAVVRVVT*
Ga0066903_1031088661	3300005764	Tropical Forest Soil	MEAQTRDAITGIGLVAFGAIAVIALCIGVCALADAVSRVVA*
Ga0066903_1037346761	3300005764	Tropical Forest Soil	MRDAITGIGLVALGTIAVLALCIGVCVLADVVVRIVA*
Ga0066903_1040779031	3300005764	Tropical Forest Soil	MRDEITGIGLVVFGTIAVLALCIGVCALADAVIRVVT*
Ga0066903_1068348831	3300005764	Tropical Forest Soil	VGIAIQRMETPMKDAIIGIGLVAFGAIAVLTLCIGVCALADAVI
Ga0066903_1076033323	3300005764	Tropical Forest Soil	MEAQTRDAITGIGLVAFGAIAVIALCIGICALADAVSRVVA*
Ga0075017_1015024962	3300006059	Watersheds	MRDAITGIGLVAFGTIAVLGLCIGVCALADAVIRVVA*
Ga0075014_1007790431	3300006174	Watersheds	VIEGAPMRDAISGIGLVVFGTIAVLALCIGVCALADAAIRVVA*
Ga0079222_101235701	3300006755	Agricultural Soil	MEARMRDAITGIGLVAFGTIAVLGVCIGVCALADAVIRVIT*
Ga0126374_102597333	3300009792	Tropical Forest Soil	REAITGIGLVAFGTIAVLALCIGVCALADAVIRVLA*
Ga0126373_101410004	3300010048	Tropical Forest Soil	MEAQTRDAITGIGLVAFGAIAVIALCIGICALADAVSRAVA*
Ga0126373_103554073	3300010048	Tropical Forest Soil	MREAMTGIGLVAFGTIAVLALCIGVCALADAVIRVLA*
Ga0126373_107482163	3300010048	Tropical Forest Soil	MRDAITGIGLVAFGTIAVLALCIGVCVLADAVVRLVT*
Ga0126373_108680623	3300010048	Tropical Forest Soil	MDERRSMEAPMRDAITGIGLVAFGTFAVMALCIGVCALADAVIRIVT*
Ga0126370_118532961	3300010358	Tropical Forest Soil	MRDAITGIGLVAFGTIAVLALCIGVCALAEAVIGLVA*
Ga0126376_105398032	3300010359	Tropical Forest Soil	MEAQTKDAITGIGLVAFGAIAVIALCIGICALADAVSRVVA*
Ga0126372_108696162	3300010360	Tropical Forest Soil	MREAITGIGLVAFGTIAVLAVCIGVCALADAVVRVVARQKL*
Ga0126372_117582572	3300010360	Tropical Forest Soil	MDERITGIGLFAFGTIAVPAVCIGVCALADAIIRVVA*
Ga0126379_121476563	3300010366	Tropical Forest Soil	MRDAITGIGLVAFGTIAVLALCVGVCALADAVIRVVA*
Ga0126381_1001195995	3300010376	Tropical Forest Soil	MEAQTKDAITGIGLVAFGAIAVIALCIGICALADAVSRAVA*
Ga0126381_1035190122	3300010376	Tropical Forest Soil	MDERRSMEAPMRDAITGIGLVAFGTIAVLALCIGVCALADAVIRVVT*
Ga0126381_1038915701	3300010376	Tropical Forest Soil	MEAQTRDAITGIGLVAFGAIAVVALCIGICALADAVSRVVA*
Ga0126369_105856732	3300012971	Tropical Forest Soil	MDERITGIGLFAFGTIAVLTLCIGVCALVDAIIRVVA*
Ga0126369_115330103	3300012971	Tropical Forest Soil	MRDGITGIGLVAFGTIAVLALCIGVCALADAIIRVVA*
Ga0126369_135472501	3300012971	Tropical Forest Soil	MEAQTRDAITGIDLVAFGAIAVIALCIGVCALADAVSRVVA*
Ga0182036_105013324	3300016270	Soil	MRDAITGIGLVAFGTIAVLALCIGVCALADAIIRVVA
Ga0182036_115751252	3300016270	Soil	MRDAITGIGLITFGTIAVLALCIGVCALADAVIRVVA
Ga0182041_101072233	3300016294	Soil	MRDEITGIGLVAFGTIAVLVLCIGVCALADAVIRVVA
Ga0182033_102978201	3300016319	Soil	MNERRSMETPMRDAITGIGLVAFGTIAVLALCIGVCALADAVTRVAA
Ga0182033_105414363	3300016319	Soil	MGDGIIGIGLVAFGTIAVLALCIGVCALADAIIRVVA
Ga0182033_120472862	3300016319	Soil	PMRDAITGIGLIAFGTIAVLALCIGVCALADAVVRLVA
Ga0182032_107223651	3300016357	Soil	MRDAITGICLVAFGAIAVLAVCIGVCALADAVIRVVA
Ga0182034_106965003	3300016371	Soil	PMREAITGIGLVAFGTIAVLALCIGVCALADAIVRVVA
Ga0182040_102708763	3300016387	Soil	MRDAIIGIGLIAFGTIAVLALCIGVCALADAVVRVVA
Ga0182039_108086191	3300016422	Soil	MRDAITGIGLVVFGTIAVLGLCIGVCALADVVIRVVA
Ga0182039_122435252	3300016422	Soil	MEAPMRDAITGIGLVAFGAIAVLALCIGVCALADAVIRVV
Ga0182038_114638961	3300016445	Soil	RMRDAITGIGLVAFGMIAVLGLCIGVCALADVVIRVVA
Ga0187809_103309921	3300017937	Freshwater Sediment	MKDAITGIGLVAFGTIAVLGLCIGACALADAIIRAAA
Ga0187779_107446571	3300017959	Tropical Peatland	LRTLAPMRDAITGIGLVAFGTIAVLALCIGVCTLADAVVRVVA
Ga0187780_103295984	3300017973	Tropical Peatland	MRDAITGIGLVAFGTIAVLALCIGVCALADAVVRVVA
Ga0187777_105858142	3300017974	Tropical Peatland	MRDAITGIGLVAFGTIAVLALCIGVCTLADAVVRVVA
Ga0187766_100484331	3300018058	Tropical Peatland	MRDAITGIGLVAFGTIAVLALCIGVCTLAEAVVRVVA
Ga0187765_100039514	3300018060	Tropical Peatland	MRDAMTGIGLVAFGTIAVLALCIGVCALADAVVRVVA
Ga0210385_111193571	3300021402	Soil	MEATIRDAITGIGLVAFGTIAVLALCIGVCALADAVIRVMA
Ga0126371_101772024	3300021560	Tropical Forest Soil	MRDAITGVGLVAFGTIAVLALCIGVCALADAIIRVVV
Ga0126371_101848294	3300021560	Tropical Forest Soil	VQNEEAPMREAMTGIGLVAFGTIAVLALCIGVCALADAVIRVLA
Ga0126371_101987552	3300021560	Tropical Forest Soil	MRDAITGIGLVAFGTIAVLALCIGVCALTEAVIGLVA
Ga0126371_107852493	3300021560	Tropical Forest Soil	MEAQTRDAITGIGLVAFGAIAVIALCIGVCALADAVSRVVA
Ga0207839_10091852	3300027010	Tropical Forest Soil	MRDALTGIGLVTFGTIAVVALCIGVCALADVVIRVVA
Ga0207826_10213673	3300027680	Tropical Forest Soil	METSIRDAITGIGLVAFGTIAVLALCIGVCALADVVIRVVA
Ga0318516_105619951	3300031543	Soil	MRDEITGIGLVAFGTIAVLVLCIGVCALANAVIRVVA
Ga0318541_102208602	3300031545	Soil	MREAITGIGLVAFGTIAVLALSIGVCALADAVIRVLA
Ga0318541_105146681	3300031545	Soil	ETPMRDAITGIGLVAFGTIAVLALCIGVCALADAVTRVVA
Ga0318538_101365063	3300031546	Soil	MREAITGIGLVAFGTIAVLALCIGVCALADAVIRVLA
Ga0318573_108050991	3300031564	Soil	MRDAITGIGLVAFGTIAVLALCIGVCALADAIVRVVA
Ga0310915_101060652	3300031573	Soil	MRDAITGIGLVAFGMIAVLGLCIGVCALADVVIRVVA
Ga0310915_104802872	3300031573	Soil	MRDAITGIGLIAFGTIAVLALCIGICALADAVVRVVA
Ga0310915_106369621	3300031573	Soil	RDAITGIGLVAFGAIAVLAVCIGVCALADAVIRVVA
Ga0310915_108002172	3300031573	Soil	MDERSSMEVPVRDAITGIGLMAFGAIAVLALCIGVCALADAVIRVVA
Ga0310915_108284701	3300031573	Soil	MRDAITGIGLVAIGTIAVSALCIGVCALADAVVRVVA
Ga0310915_111841601	3300031573	Soil	MRDAITGISLVTFGTIAVLALCIGVCAADVVVRVMA
Ga0318572_108020932	3300031681	Soil	VRNEEAPMREAITGIGLVAFGTIAVLALCIGVCALADAVIRVLA
Ga0318501_105942953	3300031736	Soil	VQNEEAPMREAITGIGLVAFGTIAVLALSIGVCALADAVIRVLA
Ga0307477_110903522	3300031753	Hardwood Forest Soil	MRDAIKGIGLVAFGTIAVLALCIGVCALADAVIRVVT
Ga0318523_105081222	3300031798	Soil	VQNEEAPMREAITGIGLVAFGTIAVLALCIGVCALADAVIRVVA
Ga0318567_108751262	3300031821	Soil	VQNEEAPMREAITGIGLVAFGTIAVLALCIGVCALADAVIRVLA
Ga0310917_100335805	3300031833	Soil	MEARMRDAITGIGLVAFGTIAVLGLCIGVCALADVVIRVVA
Ga0306919_103512103	3300031879	Soil	MEARMRDAITGIGLVAFGMIAVLGLCIGVCALADVVIRVVA
Ga0318520_102298463	3300031897	Soil	VQNEEAPLREAITGIGLVAFGTIAVLALCIGVCALADAVIRVLA
Ga0306923_1002168211	3300031910	Soil	MRDAITGIGLVAFGTIAVLALCIGVCALADAVIRVVA
Ga0306923_101170515	3300031910	Soil	MRDAITGIGLVAFGTIAVLALCIGVCVLAEAVMRVVA
Ga0306921_108178173	3300031912	Soil	MEAPMRDAITGIGLVAFGAIAVLALCIGVCALADAVIRVVA
Ga0306921_118560551	3300031912	Soil	MDERSSMEVPMRDAITGIGLMAFGAIAVLALCIGVCALADAVIRVVA
Ga0310912_114292701	3300031941	Soil	MREAITGIGLVAFGTIAVLALCIGVCVLADAIIRVVT
Ga0310916_105897331	3300031942	Soil	MRDAITGISLVTFGTIAVLALCIGVCALADVVIRVMA
Ga0310913_108174433	3300031945	Soil	VPVRDAITGIGLMAFGAIAVLALCIGVCALADAVIRVVA
Ga0310913_108382252	3300031945	Soil	MREAPMREAPMREAITGIGLVAFGTIAVLALCFGVCVLADAIIRVVT
Ga0310910_110144012	3300031946	Soil	MEAPMRDAITGIGLVAFGAIAVLALCIGVCALADAVMRVVA
Ga0318530_104882591	3300031959	Soil	MREAITGIGLVAFGTIAVLALCIGVCALADAVVRVVA
Ga0310911_102225611	3300032035	Soil	STDRGKPMRDAIIGIGLIAFGTIAVLALCIGVCALADAVVRVVA
Ga0310911_103105431	3300032035	Soil	MEVPMRDAITGIGLMAFGAIAVLALCIGVCALADAVIRVVA
Ga0310911_103658891	3300032035	Soil	SMRDAITGIGLVAFGTIAVLALCIGVCALADAVIRVVA
Ga0318549_103110822	3300032041	Soil	MREAITGIGLVAFGTIAVLALSIGVCALADAVIRV
Ga0318533_102639583	3300032059	Soil	MRDAITGIGLVAFGTIAVLALCIGVCALADAVIRVV
Ga0318533_106775682	3300032059	Soil	MRDAITGIGLVAFGTIAVLALCIGVCALADAVTRVAA
Ga0306924_103613225	3300032076	Soil	MEVPVRDAITGIGLMAFGAIAVLALCIGVCALADAVIRVVA
Ga0318577_102956732	3300032091	Soil	MRDAITGIGLVAFGTIAVLALCIGVCALADAATRVVA
Ga0306920_1000170865	3300032261	Soil	MRDAITGIGRLRHDCRAGTCIGVCALADAVVRVVA
Ga0306920_1008834261	3300032261	Soil	MGDGIIGIGPVAFGTIAVLALCIGVCALADAIIRVVA
Ga0306920_1009055202	3300032261	Soil	LRYGAPMRDAITGIGLVAFGTIAVLALCIGVCALADAVIRVVA
Ga0306920_1009957824	3300032261	Soil	MREAPMREAITGIGLVAFGTIAVLALCIGVCVLADAIIRVVT
Ga0306920_1020182372	3300032261	Soil	MRDAITGIGLVAFGTIAVLALCIGVCALADAVTRVVA
Ga0306920_1024619541	3300032261	Soil	MRDAITGIGLVALGTIAVLALCIGVCALADAIVRVVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097838

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences