Scaffold Ga0208273_100031

Overview

Basic Information

• Taxon OID: 3300026846
• Scaffold ID: Ga0208273_100031
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgHMA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1947
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003142	Metagenome / Metatranscriptome	505	Y
F006093	Metagenome / Metatranscriptome	382	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208273_1000311	F003142	AGG	MNHHDLITIQQITNLVERGKSREEIAELIEVTIDSLQVTCSRLGISLRRPRLDNGIRLLPRGKPVPSDGRTTPDLSCDVSVPLQPIAERRQDSQPGPEQTQYTTPHQAGSKAKEMDFANLALTMRYKGEERTTELALTQLAIGQLALEAGLRDMSIGELVGELLTATIQ
Ga0208273_1000312	F006093	AGG	MQPTNLNLKVIARDATLRGDTKTLFHALDLLERVVPIATFMDFCTELDELRLQGARPRPH