Scaffold Ga0207760_104606

Overview

Basic Information

• Taxon OID: 3300026845
• Scaffold ID: Ga0207760_104606
• Source Dataset Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1199
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015921	Metagenome / Metatranscriptome	251	Y
F053460	Metagenome / Metatranscriptome	141	Y
F084321	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207760_1046061	F015921	N/A	VPKKPIQWEVYRPIKGSPGAFIGIVEAPDETSALKAAIEEFGIVNPEHQNRLFVRRVPSDDN
Ga0207760_1046062	F084321	AGGAG	MRKKKRQRYLVRVVPGEGDPCPRCGVPMQIREYNNLTDKHLHRPYFYTRWFCCMDKSCRTTLVMPRRYKVMNPVILGDALR
Ga0207760_1046063	F053460	GAGG	MVILSFLATLLWIAMLIGFLVAVFWMIATVVFIRGFKRWVHGDQIKQIEEDLIEDTKSASPWRGL