Scaffold Ga0209909_101775

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209909_101775

Scaffold Ga0209909_101775

Overview

Basic Information
Taxon OID	3300026825 Open in IMG/M
Scaffold ID	Ga0209909_101775 Open in IMG/M
Source Dataset Name	Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-22 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2997
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Cyanobacterial → Cyanobacterial Communities From The Joint Genome Institute, California, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.9313884	Long. (^o)	-122.0239394	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066275	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209909_1017752	F066275	AGGAGG	VNEAHFREIEKVLLYVSEARRKAERVAESIERDGAEPHLVAALRDAERDLAELHRRLMHGTYWAVPKEQLALVPEDGPGR

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