NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208559_102331

Scaffold Ga0208559_102331


Overview

Basic Information
Taxon OID3300026762 Open in IMG/M
Scaffold IDGa0208559_102331 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2311
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026046Metagenome / Metatranscriptome199Y
F062913Metagenome / Metatranscriptome130N
F071410Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0208559_1023311F062913N/ANAVFRLLPCLFMERSRAVEVFSNINCEGNTQIISVINRALELIRDGECDKAYNELNKLRMFL
Ga0208559_1023313F026046N/AMVGLLEIYEGYLNKPSCESLDNIRIGKDGRGYRKLRKEDIPIEWLNYAKKHGIKVRNKTLIIGDALDPVDPNCMPLMNAFYPRNSSGEWCCTPSMAQYVNSGSQTPTQTCFSAGGYGGINIPYFGIALIDANGNLDLLMDTNNVISSATPNWQNPASNPPKIVCGTQQYNGSVYIQFTANPKTTFNISTAYLLIGTNTLASGGVFSTIMEWTGINYQTSQNTPLTIYIYLYVS
Ga0208559_1023314F071410AGTAGMSKDKDLSSYRFNKESTLQLIAVGISNQVSKARGSVVSITTSNILSELNGDKPIIGFVAWRSIVKYFLDALVSRGYMTVYRKGNKKPYNTARVHVYMIPKRLRHNIPNPLFSTDPNLIYVFLKSVLSNVD

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