NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208548_104895

Scaffold Ga0208548_104895


Overview

Basic Information
Taxon OID3300026627 Open in IMG/M
Scaffold IDGa0208548_104895 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2249
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026046Metagenome / Metatranscriptome199Y
F062913Metagenome / Metatranscriptome130N
F071410Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0208548_1048951F071410AGTAGMSKDKDLSSYRFNKESTLQLIAVGISNQVSKARGSVVSITTSNILSELNGDNPIIGFVAWRSIVKYFLDALVSRGYMNVYRKGNKKPYNTARVHVYLIPRRLRHNIPNPLFSTDPNL
Ga0208548_1048952F026046N/AMAGLLEIYEGYLNKPTCNALDNIRIGRDGIGYRKLRKEDIPIEWLNYAKKHGIKVKNKTLIIGDALDPIDPNCILLMNAFYPQTSSGQWCCTPSIAQYVNSGSQTPTQTCFSANGANIINIPYMGIALIDANGNLDLLMDTNSVVSSATPNWINPVSNPPSVLCGTSQNNGTVTLSFAAMPTILFNISTAYLLIGTNTLASGGIFSTVIEWNGINYQPQVNMPLTINIYLGAQ
Ga0208548_1048954F062913N/AMERSRAVEVFSNINCEGNTQILSIINRALELIRGGECDKAYNELNKLRMFL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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