NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209648_10132767

Scaffold Ga0209648_10132767


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10132767 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1991
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F018044Metagenome / Metatranscriptome237Y
F031613Metagenome / Metatranscriptome182Y
F070523Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_101327671F031613AGGAGMPITITLQPNNVDGSGSNFFYAIGTLAFSGNYPTG
Ga0209648_101327672F000696GGAMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTILLPYANSAYRKVQRALGNAGGGGFIQDDVLLVVTAVTQPDTSLQVSITDATAPPNQLPTDLLVPLKIWERPKGSTDDFLEMVDLTQHGGLPSRAQDITLSVWEWRADGIYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAYATAAMAAWARGSPLAEKWDDAASDAIEDLVSAAVRREQQSARRRRPFSARSGYTPF
Ga0209648_101327673F070523AGGAVKKEKLSILPDERVAIHAKLGSILKGGDPAEILLVIILLLALRPPSRRKAQKKKGQPQPL
Ga0209648_101327675F018044N/AGPYPSRGEYEHCFTLESPRGEFVQLTPTIAEHIARAIECSRHAPRSRSRAHLYERERRDDRHYEQWAYDALDDAVPAFHKQPFVTVL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.