Scaffold Ga0209648_10011488

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10011488
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7704
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F001367	Metagenome / Metatranscriptome	713	Y
F006480	Metagenome / Metatranscriptome	372	Y
F070523	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100114881	F001367	AGGA	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRALSNAGGGGFIQDDALLVVTAVTQTDTSLQVAITDATAPPNQLPTDLLVPLKIWERRNGSTDDFLEMVDLTRHGGLPSRAQD
Ga0209648_100114882	F070523	AGGAG	MKGEKVSLLPDERVAIHAELGSVLKGGDPAETLLVIILLLALRPPSRRKAPKKKGQPKRL
Ga0209648_100114883	F000739	N/A	VKRIEIWLKGILAAAISGGAGGILTGFAAVGIDPQHFNLQVGIGATLRIAAAAALINAVIGVAAYLQKSPLPGE
Ga0209648_100114884	F000512	N/A	MIRVIRETHNTPESVAQRLERAGDRNRLGEPNYRAVWGWNRLAWIGGKFEERDEHGALLRERIELRLEPKYPAVNRWHIERWLPPETYGSPRAWYAQTIERENGISIPALGPYPSRGEYEHCFTLESPRGGFLQLTPTIAEHIACAIEWSRNCARTKSRSRLCDREQRTERSYEQWAFDVMDDAVPAFHKQPFVTVV
Ga0209648_100114885	F006480	N/A	MRRIFIGGICGGISARSKRDPLMFVFLRVDREQDVAILRPMIAPNIGVLLDSGPRELKPGTVLQCWSSVREHDAIVETRIAKVTDLVLDCGEQKFVVKTVEFSPRAK