Scaffold Ga0209648_10000621

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10000621
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27383
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (86.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F002830	Metagenome / Metatranscriptome	527	Y
F003449	Metagenome / Metatranscriptome	486	Y
F038383	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000062114	F002830	AGGA	MRKTKFTAGLLTFSLLLAASAIAGNTTKGTLNVDETVTVAGKQLPAGRYQVEWTGNGPTVELTISSGRDTVAKVPAQILPVKTAQTGSGYSTNTDQAGNKELTGIFFGGKKYELSIGEASAATPSDKTQGSN
Ga0209648_1000062119	F003449	N/A	MFRFQYSVTTKASRKLAWEVFSNWRRWNEFANIYGEVQWREGRPWEAGSRLDIEVLEPVKTVVSHVITNCQPAHKVGWIDHALGVVLAQWVSFEEHARKGTRVHTWGDVVHAGVMIAGRSAEQIVTNFTETWYENFRTVCDSVAATSGD
Ga0209648_1000062123	F000173	GGAGG	MKTFEVQFRFRDRNEETRQSTTKVEATSLPGAVGKATREFVKGLDRKQRFDMNKNGLEITAKSVGTTTETRAETSADAAAS
Ga0209648_1000062126	F038383	GAGG	VQLTTQDPVTDSYPVEASGWDSAQSFFVEKSELTWDEATGKHLTLSRCLCPGSLIFLRLLQPVSQDRSLSVAYQAQHVGVTPDGQQKFRLSQIQPDSVSKD