Scaffold Ga0256404_1126703

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256404_1126703

Scaffold Ga0256404_1126703

Overview

Basic Information
Taxon OID	3300026549 Open in IMG/M
Scaffold ID	Ga0256404_1126703 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1378
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	Canada: Alberta
Coordinates	Lat. (^o)	49.6935	Long. (^o)	-112.8418	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094711	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256404_11267032	F094711	AGGAGG	MKTALWIIALCEVVRVVQNAVQIREIKRDTGARDNAYAEFVKSLKMNDRQFVERMLKEFEEREGE
Ga0256404_11267034	F094711	AGGAGG	MKTALWIIAICEVVRAAQNAIQLKAIKRDTGARDNAYAEFVKSLKMNDRQFVERMLKEFEEQEGEK

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