NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256404_1000281

Scaffold Ga0256404_1000281


Overview

Basic Information
Taxon OID3300026549 Open in IMG/M
Scaffold IDGa0256404_1000281 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)132047
Total Scaffold Genes256 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (32.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y
F079361Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0256404_1000281107F079361N/AMIYFTIAKNECGYLIDSISEDLEALKRKFPDEKIYKSDEPIVSIYVIKDQLNEIYS
Ga0256404_1000281109F064301N/AMAFFILFRMAKTKGTSRGAVIPVKTQPIWQIGMLFPDGRKISKPKCTLNEIFNTYFIGLDKYLDKGLSSEELLNKYKESFISKGIKVQINYIDSYGHLWKGKVAWPRESKFIEYLNNRLNEK
Ga0256404_1000281110F057035N/AMTEKEFLEKRIPIWLEGEDLHVSTPSNMDKNNIHAMLTKKYGYNFMFCIRGYYWPGSHVQLYIGQYECPNCTLLVTSYLFQYFPDIKYIGFGCYEGNPGEIWPAKIVVARNMECLKDDILNKQTEAAV
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