NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256867_10116280

Scaffold Ga0256867_10116280


Overview

Basic Information
Taxon OID3300026535 Open in IMG/M
Scaffold IDGa0256867_10116280 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1021
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034330Metagenome / Metatranscriptome175Y
F098572Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0256867_101162801F098572N/AMVGEVTGFLHVVRVDGPIDPVIAEYRIAFAPLGGRLRSRHATVHGLDRLTAFLRRARVPTPEIERAWRALAMRRVHSIARVGLTPAQIEALGL
Ga0256867_101162802F034330GAGGMRLVETLALLLAATVLFMWAIFAHPTPEERSRLYDSMGSSTGIAWR

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