Scaffold Ga0209806

Basic Information
Taxon OID	3300026529 Open in IMG/M
Scaffold ID	Ga0209806_1002006 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026529 Open in IMG/M

Scaffold ID

Ga0209806_1002006 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12893
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12893

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010022	Metagenome	309	Y
F014723	Metagenome	260	N
F023077	Metagenome	211	N
F099704	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_100200610	F023077	GGA	LKKRIGVLAALMITAIALLVSPAYSATMNPQENVNLYTGNKLIIESNQASIKSVVVRGNLTAATLSNNVYPAKNFTLTTNSTQLYTVDVLLSYQSPYSSDIVISDPSSGSKTEYTSYFVSGGDLNLTVFASFQAAPSSGPSTPLGWSSFYGWVAQFGGAFPFWIKILYAVLGVQFAFVGYRWIRFEDERRRIEGHLPPLDRGNKAYLWTEVVFRTLVAGFAISLAVMIGEVLVLLIAQYLFFVNLDLVSLIDFFSIFFVAALGTLVYLTREGLDRIFDLKPIMED
Ga0209806_10020066	F099704	AGG	MPDQTNTWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209806_10020067	F010022	GGAG	MLALALLFGVSYPPAFLFIVLFGIPISILNTILGLITRTPPGLELQPESANIRLIIDRGVVRASIYQLVFLNSKLILKRLTSVMITVILALVLAVVGFEVLGIIGALMGGITGFSLQEFLTQRMRNKIGTEMQLTSLGKNDIEIDYNDLLEVRLVKSRLYLISENGSLTANFPRGYSRKIRPMLADLFETKFTDEESLRAAEAAEKENEKRQHSRSDRGKFSRR
Ga0209806_10020069	F014723	AGGA	MSEQYHRLFLRWEVLRGWIPAVIFASICVGLELLFFYNALNTGFVDKTVSIPIGSWNLPISIALSLALGNALVVVTLWMNVFESTAYVKAGPDKQVRRTLYPLRMIRTAALVLAPFTIILFAPYIVEANWFVNAVASVQAFKPTAESFYNWAFDVSLIDGAARFIISQMVAALGALTVSGLQLWRVKGTKNLVRAFRRRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209806_1002006

Overview

Ecosystem & Geography

Associated Families

Sequences