NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257158_1103871

Scaffold Ga0257158_1103871


Overview

Basic Information
Taxon OID3300026515 Open in IMG/M
Scaffold IDGa0257158_1103871 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)562
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001194Metagenome / Metatranscriptome750Y
F066511Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0257158_11038711F066511N/ALEMPGPNEGSVISLGLYSEAKRAQARVAQAQALGFNPGIADRKRTGNVYWIDIDLKPTDSLLNPADLQSDAGRIVRLEVKGCPPVSGPSP
Ga0257158_11038712F001194GGAVTVRGVVLRTISVVGAVIGYGCLIAFLSLVGLQSYRWFHDGEWTHIGMNDGLRIGLARCCIKDADTGRLAAFMHWLVAPVNWLGMHKVFEVVPASLA

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