NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1007617

Scaffold Ga0209809_1007617


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1007617 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5526
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022604Metagenome / Metatranscriptome213N
F025421Metagenome / Metatranscriptome201Y
F038570Metagenome / Metatranscriptome165N
F093039Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10076172F022604GAGGMLSAVNAVYAVVAAVPGIVAAYTTVPMSANTPALPMALVTPVSENRRQHAHALVRIETLVRVRIVHSPIAQGVTEAQQSALYALADAVMAALMSDVTLGGQVDHVASVDADEPAIYTLAGTDYLSVSIAVRVVEKI
Ga0209809_10076174F038570AGGAGMPATHLRRVQLGQQTTFSTPVAATSILRGVTDGSVTINHNDAVVEELGRSVSDLVVVSQRHAEGEIELQTTYEDILYGLFGLFGPVAPSGGARTFNAPITNYAAPQIYTIEYGTTGAEYRVVGGLLKEWTLRYEANAGVTESWSFIGRSVQANALTGSLPTRVVTPVLSRHASWFVDNIGSPHGATEAFQTVIEAELSINTNRHLKMFEGSQPITWGEGRWEAQLSMTVEFNSTAKAWVDALITNRVARNIRVEFVESPTIRELRIDFVGLLAEPVELFGDRDGNMTAELTFKALVAGPLNNWLQIRVVNGVATLP
Ga0209809_10076175F025421N/AMINLSKVRRIDRSAPGSFMEYARLQAIITEGDLMAIARALESYGVDVRELSFNELTDVIKHIAGEPTPLGDTSATA
Ga0209809_10076176F093039GAGVTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRAMRKHG
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