Scaffold Ga0228622_1019098

Overview

Basic Information

• Taxon OID: 3300026479
• Scaffold ID: Ga0228622_1019098
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 26D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1956
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044514	Metagenome / Metatranscriptome	154	N
F092096	Metagenome / Metatranscriptome	107	N
F105168	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228622_10190981	F092096	N/A	PQTEVVQENNQSVNVEGPTIVVNIPEQQVKEKVIIKEVKVPVEKKKEKEQEIDW
Ga0228622_10190982	F044514	N/A	MSSFKKWWKLNGQGIGFIVGIVFLNAYFLLLGDLMNKHEWLAGVWLLCFFGFAGWYSWQMKIHGWRLPKDIKDTH
Ga0228622_10190983	F105168	GGAG	MEVIKQIFGDKMSDYKIVDIMLKIWVAGLLSMVVLGLVAVISHIIMNPSSVDNATFGVFDTLGN