Scaffold Ga0163215_100880

Overview

Basic Information

• Taxon OID: 3300026367
• Scaffold ID: Ga0163215_100880
• Source Dataset Name: Saline lake microbial communities from Ace Lake in Antarctica - Synechococcus sp. Ace-P (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29842
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4717
  • Long. (^o): 78.1877
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082368	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163215_10088015	F082368	AGGAGG	MEIELWTLFDALMKWVIIPMAAILWVHNQKLGTHEKEVLRIMTLLSERKDQRDEDRAELKEALRDLRAAILRLDQRLADFTLAQTAQTPGPRSVPGTQARRAKG