3300026367: Saline lake microbial communities from Ace Lake in Antarctica - Synechococcus sp. Ace-P (Hybrid Assembly)

Overview

Basic Information

• IMG/M Taxon OID: 3300026367
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0191402 | Ga0163215
• Sample Name: Saline lake microbial communities from Ace Lake in Antarctica - Synechococcus sp. Ace-P (Hybrid Assembly)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 178338637
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Roseibaca → Roseibaca ekhonensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4717
  • Long. (^o): 78.1877
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026204	Metagenome	198	Y
F055545	Metagenome	138	Y
F074900	Metagenome	119	Y
F082368	Metagenome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0163215_100880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	29842
Ga0163215_109310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1369
Ga0163215_114657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Roseibaca → Roseibaca ekhonensis	899
Ga0163215_115088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876
Ga0163215_117299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	775
Ga0163215_121618	Not Available	631

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0163215_100880	Ga0163215_10088015	F082368	MEIELWTLFDALMKWVIIPMAAILWVHNQKLGTHEKEVLRIMTLLSERKDQRDEDRAELKEALRDLRAAILRLDQRLADFTLAQTAQTPGPRSVPGTQARRAKG
Ga0163215_109310	Ga0163215_1093102	F082368	MEIELWTLFDALMKWVIIPMAAILWVHNQKLGTHEKEVLRIMTLLSERKDQRDEDRAELREALRDLRAAILRLDQRLADFALAQTAQAPGPRPVSSTQARRAKG
Ga0163215_114657	Ga0163215_1146571	F026204	MQDTIPLTDAPRALRAHGLSTTYNALWIAIVAGHVPAERVGKRWHVRAADLAVIAKTLTK
Ga0163215_115088	Ga0163215_1150883	F055545	KLSTVGGAKVKADVIASHAPNMAHQALNGNPVSGGEH
Ga0163215_117299	Ga0163215_1172992	F082368	MEIELWTLFDALMKWVIIPMAAILWVHNQKLGSHEKEVLRIMTLLAERKDQRDEDRAELKEALRDLRAAILRLDQRLADFTLAQTAQTPGPRSVPGTQAR
Ga0163215_121618	Ga0163215_1216182	F074900	MAARIVNMANPNKDEKLCATVEEARGTLAAMVETFRSQGYKVDEQHSRDEVYLYPQYAVYDYSDGWVGTYTILPR