Scaffold Ga0257170_1006576

Overview

Basic Information

• Taxon OID: 3300026351
• Scaffold ID: Ga0257170_1006576
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1378
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011497	Metagenome	290	Y
F014199	Metagenome	265	Y
F017074	Metagenome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257170_10065764	F014199	N/A	MPRSRPEKKSPASAPAERRVLPMELQIGDRLVDETGEWEVIGRPYTTAGGKTAHVRVQRVGQPDVTDLRTWGAHERIAVRRATAEEGE
Ga0257170_10065765	F017074	AGG	VLEIALTIGGLLLSVLTYFAGVRHGKRYREEDRAAASEHDADHRIDRVVQRYALRVRINQTGALHGLLVAGVKNLRSSDEIRLARERATAQTGNDPLRQYSLDGVDLKEFVDACDFDNVSIRNERELLARYGKRPDA
Ga0257170_10065766	F011497	N/A	TLHTRWGEEAWPQVKAEFKKALALRSQIRRAGWFN