Scaffold Ga0209801_1000002

Overview

Basic Information

• Taxon OID: 3300026326
• Scaffold ID: Ga0209801_1000002
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 362283
• Total Scaffold Genes: 361
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 248 (68.70%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000484	Metagenome / Metatranscriptome	1088	Y
F001801	Metagenome / Metatranscriptome	632	Y
F004535	Metagenome / Metatranscriptome	434	Y
F011376	Metagenome / Metatranscriptome	291	Y
F024994	Metagenome / Metatranscriptome	203	N
F037645	Metagenome / Metatranscriptome	167	N
F055128	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209801_1000002149	F037645	GAGG	VRPRLAVLVALGALACGSPGPDKVAPQSPQQTLTQFMSAVKANDISRMGTLWGSDRGPAASWMKSDELKERLTVIQKYLDHAGYRLVEGPLPVAGHDNTMSFRVELQRANGCSVVFPVDLVRAKGGGWVVNDVHLASLSTPGGACRQ
Ga0209801_100000216	F024994	GGAGG	MHCPKNLSKIAALTLLTFAVFGTACERPTPLSPPLAALSLDPAATGTSYSVIGDCAQATIIDPGSVKNVDAMMIQRGTVFDCPLTGDIEGVARVVLNLTLRNVGTPQVEGRVFGETTFLVTKFFGRTDLTGTFEGPFNTTLEEVRFGSARTRRRGTGDFRGIVLHGVAVQNPPGSGTEVENGRMVGREEP
Ga0209801_1000002170	F004535	AGGA	MHAWGAGMFSRAMRALAAATGLMVLLALQPEPARLIEAASMHGSSHARALILSDQARRYLALEYRSYPTEFMGCMIGEVRGNAVLVSRIAPADVDPAQSTATAVLPKQTCEDAGWKETVGMIHSHPTGERCWYFFPGTQVPSSDAESFGRQPYPVDAIMCGDRVVWISRDMVQQQVRLSVRGADGRPAASPHKRGNRIHAGAASPDGQD
Ga0209801_1000002244	F000484	N/A	MHLQAKFAQRYVGHWRVARGDTLTLPELGDRFKLVDVDLDTGRVVVDRTCRFGGTLIFAVPRAETLAVTWEGQPDQALIHGWPADLGPFAGIGATRVGDSLVGAILFDSRLGVEVRPGVTARFVAGRLSLGTARNGRRP
Ga0209801_1000002251	F011376	GAG	VSAPPQAAVALAWAVIGPPLVIFAATRARRGQIPLHVTLMTVSIVIEVLVVIGFSFLMAPSPRRPALVALPFFKIHLTFAVTTLVGIAWQLASRATPRLRWLHRHTGPYVVLTWALALITGIYNYVFLYLMGSR
Ga0209801_1000002252	F001801	N/A	MKIFLRNLILCALPLLFAAGAGHYFTTIQGSCGAMVGALFSGKCAGRQREYHVRFQLGGAGVGVLIAATLGTWLEHRRRRAVQSTTPAGEPS
Ga0209801_1000002323	F055128	GAG	MGKRVLLATGDLLFRSKLSAVVTAAGGEVSRDAARCDLAVLELAEPGATETIGELVGRGIPVLAYGAHVRPELLRSARDAGAMAVPNSQVEARLRDLLKQ