Scaffold Ga0209152_10000093

Overview

Basic Information

• Taxon OID: 3300026325
• Scaffold ID: Ga0209152_10000093
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44453
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (58.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001912	Metagenome / Metatranscriptome	618	Y
F002008	Metagenome / Metatranscriptome	604	Y
F006382	Metagenome / Metatranscriptome	374	Y
F007303	Metagenome / Metatranscriptome	353	Y
F017200	Metagenome	242	Y
F018153	Metagenome	236	Y
F050273	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_1000009312	F006382	N/A	LSRPQTRLVDELFALDSRIRYVALLDRNSKLLESRMRSNVMSLTPETYDRKFMGSVPPMILDTLSQLENQCGPLAHISIQYQKVDLIIFPHNNQIVAISLEPGPLEPILRKLRDSLNLHIHI
Ga0209152_1000009323	F050273	GAG	MSYNLLPDQEFALLQLLLYIFSFVTLIMIFLYIAAERPGEGKKKVEEEEE
Ga0209152_1000009326	F002008	N/A	MAVDKKVLKTCVVCKRKFLGWFSEKYCSDDCRIEGTRLKNRNRQRKGRKVLDLREGAISQQLGELGLGDTQYPMYNHELVTTMYANVSLYHGRDGKRHVRSYYDLVREIAKLNGGDTSKILARLAPREQN
Ga0209152_1000009331	F018153	N/A	MFYFQTMRVASIFSRRERIVLALLAIAVVTAVTYGVVTYQTPYGCGPDGVAAGPGIDLQVLAKPCLYIYFTGIVGGSALLILLIPVPEKKAKEP
Ga0209152_1000009336	F017200	GGA	MQPVTYTVAKGLRAGAVGGFIGSIVLGITGELGAISMNQELFYTTIAKKLGLGDYSVLGGWTLHFLVGIIAGSMFIGATAAIRRFILTTMKKALWVGILGGIAIWIVVYVPVTGILIPGDLTDTTFAVGTFVLHLLYAVVTAIVSLSLLRRTIKTKTAA
Ga0209152_100000934	F001912	AGGCGG	MSLSQWDEGSDSDHVTGLKRDIWLVGYCKILAWRGAKLPRYGREGAVEVRPFPAKKRLCVSMAQGLSGEAMKGNPTTTVIPGVDESKPSP
Ga0209152_1000009345	F007303	N/A	MSSALRTKEFLEFQQTLKDLENQLRKLLKEASANGLSETTRNMTGRVYNLAERANQIQPPETRNQSTTNQSVLEKLPEQFEEDFGKFKGLVTFVERVRKQHYNATGHNFGRTYGSFGTDELSPGRHHGKSFISTLEIRCDACGSESPQSERRDYPIHVLLHDRGQWEVCTGQSDCECQSYEGKGVRISVNLSPEKTGKGKA