Scaffold Ga0209687_1239941

Overview

Basic Information

• Taxon OID: 3300026322
• Scaffold ID: Ga0209687_1239941
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 561
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F065748	Metagenome / Metatranscriptome	127	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209687_12399411	F066970	GAG	MYLKHLSSLQFLTYVAFFSVVVAALFKFVPGKAPPIRTVPYGDDEL
Ga0209687_12399412	F000280	AGAAGG	MAEREERDSSPRLGPARPLVGYRDTGEDVRHSRGSLFRAWVILAALVVFYLAWTLTVYFLEPGLR
Ga0209687_12399413	F065748	N/A	HVQEYPGCQKLEAFVHVEEEGAVRIHCYTTWDTPEQLEVFLERGYTFDRMLVDVAEILAEPTIVMEKVF