Scaffold Ga0209131_1003114

Overview

Basic Information

• Taxon OID: 3300026320
• Scaffold ID: Ga0209131_1003114
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11098
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003278	Metagenome / Metatranscriptome	496	Y
F006902	Metagenome / Metatranscriptome	362	Y
F077604	Metagenome	117	Y
F081559	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209131_10031141	F081559	GAG	MLTNQEPDWNIDDLSDPEIYAAIRYLEPGLTNADQLDAEDQDKDNVMVICVCLYTLLLGCLVFLWFYWR
Ga0209131_10031144	F077604	AGGAG	MNFKLVTLFAVLVFASVGIVGVAHAQDDETVKANIPFDFYAGKQKMPAGYYRIGIDLGTEMISVTDKSGKHKVFLMGTPADDGDGKWLLVFKHSGDVYALEELKSDAFNWAFWTWMPVPPMESRNALPRVEVALNR
Ga0209131_10031147	F003278	GGAG	MLKISLVDNARQRRVIVEGKLVAPWVAELRNACQEARADLDGRELVVEMKCVTTISQEGENVILELINGGIRFRCHGMLSKHVVKELTRRASRNPGTRAGD
Ga0209131_10031149	F006902	GGAGG	MWKITTRGFTLQEVLIMAAMNLLTSADTAAKREKWASPK