Metagenome / Metatranscriptome Family F081559

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081559
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	68 residues
Representative Sequence	MLTNQEPDWNIDDLTDTEIYAAIRYLEADPRTEDNQDANDQDKDNGVVICVCLYILLLGCLAFVWFYWR
Number of Associated Samples	71
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.07 %
% of genes near scaffold ends (potentially truncated)	10.53 %
% of genes from short scaffolds (< 2000 bps)	72.81 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.246 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.965 % of family members)
Environment Ontology (ENVO)	Unclassified (58.772 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.158 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.64% β-sheet: 0.00% Coil/Unstructured: 45.36%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF13581	HATPase_c_2	22.81
PF08281	Sigma70_r4_2	9.65
PF00072	Response_reg	1.75
PF00455	DeoRC	0.88
PF13185	GAF_2	0.88
PF00873	ACR_tran	0.88
PF00324	AA_permease	0.88
PF07080	DUF1348	0.88
PF04055	Radical_SAM	0.88
PF13492	GAF_3	0.88
PF13533	Biotin_lipoyl_2	0.88
PF02457	DAC	0.88
PF09137	Glucodextran_N	0.88
PF04542	Sigma70_r2	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	Transcription [K]	1.75
COG0120	Ribose 5-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.88
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	0.88
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.88
COG0833	Amino acid permease	Amino acid transport and metabolism [E]	0.88
COG1113	L-asparagine transporter or related permease	Amino acid transport and metabolism [E]	0.88
COG1115	Na+/alanine symporter	Amino acid transport and metabolism [E]	0.88
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.88
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.88
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.88
COG3558	Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamily	Function unknown [S]	0.88
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.25 %
Unclassified	root	N/A	1.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.25 %
Unclassified	root	N/A	1.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.25 %
Unclassified	root	N/A	1.75 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	56.14 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	12.28 %
Unclassified	root	N/A	1.75 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	56.14 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.53 %
Unclassified	root	N/A	1.75 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	56.14 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.53 %
Unclassified	root	N/A	1.75 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	56.14 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.53 %
Unclassified	root	N/A	1.75 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	56.14 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	2.63 %
Unclassified	root	N/A	1.75 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	56.14 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.75 %
Unclassified	root	N/A	1.75 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.88 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	56.14 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.75 %
Unclassified	root	N/A	1.75 %
Granulicella sp. GAS466	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	0.88 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10009994	All Organisms → cellular organisms → Bacteria	2578	Open in IMG/M
3300001867\|JGI12627J18819_10029136	All Organisms → cellular organisms → Bacteria	2278	Open in IMG/M
3300001867\|JGI12627J18819_10253701	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	707	Open in IMG/M
3300003505\|JGIcombinedJ51221_10353360	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300005167\|Ga0066672_10125085	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1593	Open in IMG/M
3300005468\|Ga0070707_100050634	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3981	Open in IMG/M
3300005542\|Ga0070732_10958752	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300005591\|Ga0070761_10168437	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1288	Open in IMG/M
3300005602\|Ga0070762_10089777	All Organisms → cellular organisms → Bacteria	1761	Open in IMG/M
3300005602\|Ga0070762_10771924	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	649	Open in IMG/M
3300005610\|Ga0070763_10160545	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1180	Open in IMG/M
3300005921\|Ga0070766_10871685	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	616	Open in IMG/M
3300006176\|Ga0070765_101776094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	579	Open in IMG/M
3300006893\|Ga0073928_10189969	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1618	Open in IMG/M
3300006893\|Ga0073928_10464754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	914	Open in IMG/M
3300006954\|Ga0079219_11816038	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300009038\|Ga0099829_11320855	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300009826\|Ga0123355_10993143	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	893	Open in IMG/M
3300010049\|Ga0123356_10016684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7004	Open in IMG/M
3300010049\|Ga0123356_13508005	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	544	Open in IMG/M
3300011269\|Ga0137392_10453332	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300012202\|Ga0137363_10522629	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	998	Open in IMG/M
3300012923\|Ga0137359_10262754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1539	Open in IMG/M
3300012925\|Ga0137419_10367193	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300012929\|Ga0137404_12010309	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300018034\|Ga0187863_10024583	All Organisms → cellular organisms → Bacteria	3634	Open in IMG/M
3300018468\|Ga0066662_10494342	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1112	Open in IMG/M
3300020579\|Ga0210407_10149200	All Organisms → cellular organisms → Bacteria	1802	Open in IMG/M
3300020579\|Ga0210407_10447562	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300020579\|Ga0210407_10653710	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	817	Open in IMG/M
3300020579\|Ga0210407_11151243	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300020579\|Ga0210407_11287662	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300020580\|Ga0210403_10002786	All Organisms → cellular organisms → Bacteria	15580	Open in IMG/M
3300020580\|Ga0210403_10190779	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1681	Open in IMG/M
3300020580\|Ga0210403_10430193	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1076	Open in IMG/M
3300020580\|Ga0210403_10510476	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	976	Open in IMG/M
3300020581\|Ga0210399_10059522	All Organisms → cellular organisms → Bacteria	3080	Open in IMG/M
3300020581\|Ga0210399_10094852	All Organisms → cellular organisms → Bacteria	2435	Open in IMG/M
3300020582\|Ga0210395_10625713	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	807	Open in IMG/M
3300020583\|Ga0210401_10170881	All Organisms → cellular organisms → Bacteria	2028	Open in IMG/M
3300020583\|Ga0210401_10173976	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2008	Open in IMG/M
3300020583\|Ga0210401_10722809	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300021046\|Ga0215015_10520106	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1895	Open in IMG/M
3300021088\|Ga0210404_10000035	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	166896	Open in IMG/M
3300021088\|Ga0210404_10001757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9171	Open in IMG/M
3300021168\|Ga0210406_10116126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2265	Open in IMG/M
3300021170\|Ga0210400_10010199	All Organisms → cellular organisms → Bacteria	7599	Open in IMG/M
3300021178\|Ga0210408_10031145	All Organisms → cellular organisms → Bacteria	4221	Open in IMG/M
3300021180\|Ga0210396_10442620	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300021181\|Ga0210388_10091697	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2591	Open in IMG/M
3300021401\|Ga0210393_10249146	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1440	Open in IMG/M
3300021401\|Ga0210393_10688181	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	834	Open in IMG/M
3300021404\|Ga0210389_11221649	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300021405\|Ga0210387_10071743	All Organisms → cellular organisms → Bacteria	2835	Open in IMG/M
3300021420\|Ga0210394_10229889	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300021420\|Ga0210394_11798746	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300021432\|Ga0210384_10261310	All Organisms → cellular organisms → Bacteria	1558	Open in IMG/M
3300021432\|Ga0210384_10755099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	869	Open in IMG/M
3300021474\|Ga0210390_10658589	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	875	Open in IMG/M
3300021474\|Ga0210390_10822005	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	768	Open in IMG/M
3300021474\|Ga0210390_11354712	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300021477\|Ga0210398_10530618	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	958	Open in IMG/M
3300021478\|Ga0210402_11855261	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300021479\|Ga0210410_10452514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1148	Open in IMG/M
3300021559\|Ga0210409_11115684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	664	Open in IMG/M
3300022532\|Ga0242655_10260945	Not Available	552	Open in IMG/M
3300022557\|Ga0212123_10016894	All Organisms → cellular organisms → Bacteria	8834	Open in IMG/M
3300022557\|Ga0212123_10057647	All Organisms → cellular organisms → Bacteria	3476	Open in IMG/M
3300025922\|Ga0207646_10075011	All Organisms → cellular organisms → Bacteria	3022	Open in IMG/M
3300026320\|Ga0209131_1003114	All Organisms → cellular organisms → Bacteria	11098	Open in IMG/M
3300026490\|Ga0257153_1055124	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300027071\|Ga0209214_1018404	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300027502\|Ga0209622_1032141	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	936	Open in IMG/M
3300027545\|Ga0209008_1045014	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1011	Open in IMG/M
3300027567\|Ga0209115_1081501	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
3300027635\|Ga0209625_1061937	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	836	Open in IMG/M
3300027846\|Ga0209180_10729387	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300027853\|Ga0209274_10079913	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1591	Open in IMG/M
3300027884\|Ga0209275_10435920	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	742	Open in IMG/M
3300027884\|Ga0209275_10781775	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	550	Open in IMG/M
3300027889\|Ga0209380_10528307	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	687	Open in IMG/M
3300027895\|Ga0209624_10107596	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300028017\|Ga0265356_1016964	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	788	Open in IMG/M
3300028047\|Ga0209526_10198323	All Organisms → cellular organisms → Bacteria	1391	Open in IMG/M
3300028906\|Ga0308309_10091125	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2333	Open in IMG/M
3300029636\|Ga0222749_10337117	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	787	Open in IMG/M
3300029636\|Ga0222749_10484863	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	667	Open in IMG/M
3300031708\|Ga0310686_102501635	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300031708\|Ga0310686_107272545	All Organisms → cellular organisms → Bacteria	2136	Open in IMG/M
3300031715\|Ga0307476_10036697	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	3287	Open in IMG/M
3300031715\|Ga0307476_10681483	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	761	Open in IMG/M
3300031715\|Ga0307476_10722068	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	738	Open in IMG/M
3300031715\|Ga0307476_11080141	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300031718\|Ga0307474_10410129	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1055	Open in IMG/M
3300031718\|Ga0307474_10507486	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	946	Open in IMG/M
3300031718\|Ga0307474_10600804	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	867	Open in IMG/M
3300031718\|Ga0307474_10669411	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	819	Open in IMG/M
3300031753\|Ga0307477_10009500	All Organisms → cellular organisms → Bacteria → Acidobacteria	6708	Open in IMG/M
3300031753\|Ga0307477_10036398	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3378	Open in IMG/M
3300031753\|Ga0307477_10089322	All Organisms → cellular organisms → Bacteria	2139	Open in IMG/M
3300031753\|Ga0307477_10144724	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1658	Open in IMG/M
3300031753\|Ga0307477_10175717	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1492	Open in IMG/M
3300031754\|Ga0307475_10028139	All Organisms → cellular organisms → Bacteria	4044	Open in IMG/M
3300031754\|Ga0307475_10072438	All Organisms → cellular organisms → Bacteria	2637	Open in IMG/M
3300031754\|Ga0307475_10308022	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1272	Open in IMG/M
3300031754\|Ga0307475_11126651	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	613	Open in IMG/M
3300031754\|Ga0307475_11511603	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300031823\|Ga0307478_10003810	All Organisms → cellular organisms → Bacteria → Acidobacteria	10999	Open in IMG/M
3300031823\|Ga0307478_10232739	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1492	Open in IMG/M
3300031962\|Ga0307479_10623740	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300031962\|Ga0307479_10832354	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	897	Open in IMG/M
3300031962\|Ga0307479_11051405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	782	Open in IMG/M
3300031962\|Ga0307479_11612714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.49%
Host-Associated	Host-Associated	3.51%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.11%
Aquatic	Environmental → Aquatic	4.39%
Arthropoda	Host-Associated → Arthropoda	2.63%
Plants	Host-Associated → Plants	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.11%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.51%
Digestive System	Host-Associated → Arthropoda → Digestive System	2.63%
Freshwater	Environmental → Aquatic → Freshwater	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.05%
Loam	Environmental → Terrestrial → Soil → Loam	21.05%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.51%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	2.63%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.88%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	57.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.65%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.63%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	21.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.14%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.63%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	2.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028017	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_100099945	3300001471	Forest Soil	MLTNYDPDSNFDGLTDIEICAAIRYLEPDPTNADEWHADDQDKFNGVVTCVGLYIALLVCLAFLWFYWL*
JGI12627J18819_100291364	3300001867	Forest Soil	MLTNQEPDWNIDDLTDPEIYAAIRYLEADPRTEDKRDASDHDTDNGVVICVSLYIVLLGCLAFVWFYWR*
JGI12627J18819_102537011	3300001867	Forest Soil	MLTNQEPDWNIDDLTDAEVYAAIRYLEAAGTSTDEQNDDHGVVICVSLYIALLGCLAFVWLYWR*
JGIcombinedJ51221_103533601	3300003505	Forest Soil	MLTNQEPDWNIGDLTDPEIYAAIRYLEADPRTEDKQDASDHDTDNGVVICVSLYIVLVGCLAFVWFYWR*
Ga0066672_101250851	3300005167	Soil	MLANYDPDSNVDDLTDTEIYAAIRYLEADRRTEDKQNANDQDKDNGDVICVCLYILLLGCLAFVWFYWR*
Ga0070707_1000506349	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLTNQEPDWNIDDLTHTEIYAAIRYLEADPRTEDKQDANDQDKANGVVICVCLYILLLRCLAFVWFYWR*
Ga0070732_109587522	3300005542	Surface Soil	MLTNQEPDWNIDDLTDPEIYAAIHYLEADPRTEDKQDANDHDTDNGVVICVSLYIVLLGCLAFVWFYWR*
Ga0070761_101684372	3300005591	Soil	MVTNQEPDWNIDNLTDPEIYAAIRYLEADPRTEDKQDANDPDKDNGVVICVSLYILLLGCLAFVRFYWR*
Ga0070762_100897773	3300005602	Soil	MLTNYDPDSNIDNLTDIEIYAAIRYLEPDPANADERDGDDQDKDNGVVICTCLYVAVLVCLAFLWLYWQ*
Ga0070762_107719242	3300005602	Soil	MLANYDPDWNIDDLTDTQIYAAIRYLEPGLTNADQLDADDQDKDNGVVICVVLYVALLICLAFLWFYWR*
Ga0070763_101605452	3300005610	Soil	MLANYDPDWNIDELTDAEIYAAIRYLEPGLTNADQLDADDQDKDNGVVICVFLYVALLICVVFLWFYWR*
Ga0070766_108716851	3300005921	Soil	MLPWLTNYDPDSNIDNLTDIEIYAAIRYLEPDPANADERDGDDQDKDNGVVICTCLYVAVLVCLAFLWLYWQ*
Ga0070765_1017760942	3300006176	Soil	MLTNQEPDWNIEDLTDTEIYAAIRYLEADPRTEDKQDANDQDKDNGVVICICLYVLLLGCLAFAWFYWR*
Ga0073928_101899691	3300006893	Iron-Sulfur Acid Spring	MLAYDPDWNIDDRTDTEIYAAIRYLEPGLTNAAQLDADDQDKDNGVVICVCLYVAMLLRFAFLWFYWR*
Ga0073928_104647542	3300006893	Iron-Sulfur Acid Spring	MLTNQEPDWNIDDLTDTEIFAAIRYLEADPRTEDKQDANDQDKDNGVVICVCLYILMLGCLAFVWFYWR*
Ga0079219_118160382	3300006954	Agricultural Soil	LANHEPDFNLDDLSDTEIYAAIRYLEADPRTEDKWDASDHDTDNGVVICVSLYIVLLGCLAFVWFYWR*
Ga0099829_113208551	3300009038	Vadose Zone Soil	MLTDHDSDWNIDDITDAEIYVAIRYLEPAPRNPNRQDTDDDDKDYGVVICVCLYIALFVGLVCLWFYCR*
Ga0123355_109931431	3300009826	Termite Gut	MLTNYDPDSNIDHLTDIEIYAAIRYLEPDRTNGDERHGDGQHKDNGVMICVCLCIAMLACLAFLWICWQ*
Ga0123356_100166843	3300010049	Termite Gut	MLTNYDPDSNIHGLTDIEIYDAIRYLEPNPTHADERHEDDVDEGNGVVICVCLYIAMLACLAFLWIHWQ*
Ga0123356_135080052	3300010049	Termite Gut	MLTNYDPDSNIDHLTDIEIYAAIRYLEPNRPNADQRHGDGQDQDNGVVICVCLCIATLACLVFLCIYWQ*
Ga0137392_104533323	3300011269	Vadose Zone Soil	DLTDTEIYAAIRYLEADRRTEDKQNANDQDKDNGDVICVCLYILLLGCLAFVWFYWR*
Ga0137363_105226291	3300012202	Vadose Zone Soil	MLANYDPDSNVDDLTDTEIYAAIRYLEADRRTEDQQNANDQDKDNGDVICVCLYILLLGCLAFVWFYWR*
Ga0137359_102627543	3300012923	Vadose Zone Soil	MLTNQEPDWNIDDLSDPEIYAAIRYLEPGLTNADQLDAEDQDKDNGMVICVCLYTLLLGCLVFLWFYWR*
Ga0137419_103671931	3300012925	Vadose Zone Soil	MLANYDPDSNVDDLTDTEIYAAIRYLEADRRTEDKQNANDQDKDNRDVICVCLYILLSGCLAFVWFYWR*
Ga0137404_120103092	3300012929	Vadose Zone Soil	MLANYDPDSNVDDLTDTEIYAAIRYLEADRRTEDKQNANDQDKDNGDVIGVCLYILLLGCLAFVWFYWR*
Ga0187863_100245834	3300018034	Peatland	MLTNQEPDWNVDDLTDTEIYAAIRYLEPGLTNADQLDADDQDKDNGVVICVCLYVALLICLAFLWFYSI
Ga0066662_104943422	3300018468	Grasslands Soil	MLANYDPDSNVDDLTDTEIYAAIRYLEADRRTEDKQNANDQDKDNGDVICVCLYILLLGCLAFVWFYWR
Ga0210407_101492002	3300020579	Soil	MLADYDPDRNIDDLTDTEIYAAIRYLELGVTNADHLDADDQGNDNGVVICVCLYVALLICLALLWFYWR
Ga0210407_104475622	3300020579	Soil	MLTNYDPDSNIDNLTDIEIYAAIRYLEPDPANADERDGDDQDKDNGVVICTCLYVAVLVCLAFLWLYWQ
Ga0210407_106537101	3300020579	Soil	MLTNQEPDWNIDDLTDPQIYAAIRYLEADPRTEDKQDANDQDRDNGVVICICLYVLLLGCLAFAWFYWSDARF
Ga0210407_111512431	3300020579	Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEADLRTEDKQDANDKNKDNGVMICVCLYSLLFGCLA
Ga0210407_112876621	3300020579	Soil	MLTNQEPDWNIDDLTDTEIHAAIRYLEADRRTEGKQDANDQNKDNGVVICVSLYTLLLVCLALVWYYWR
Ga0210403_1000278617	3300020580	Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEAVPRTEDKQDANGQNKDNGVAVCVSLYILLLGCLAFVWFYWR
Ga0210403_101907793	3300020580	Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEADLRTEDKQDANDKNKDNGVMICVCLYSLLFGCLAFLWFYWR
Ga0210403_104301932	3300020580	Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEADPRTEGKQDANDQDDNDNGVVICVCLYSLLLGCLAFVWFYWR
Ga0210403_105104762	3300020580	Soil	MLTNQEPDWNIDDLTDPQIYAAIRYLEADPRTEDKQDANDQDRDNGVVICICLYVLLLGCLAFAWFYWSDARFW
Ga0210399_100595224	3300020581	Soil	MLTNYDPDSNIDNLTDIEIYAAIRYLEPDPANADERDGDDQDKDNGVVICTCLYVAVLVCLAFLWLYW
Ga0210399_100948524	3300020581	Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEADRRTEDKQDAKNQDRDNGVVICISLYIFLLGCLAFMWFYWR
Ga0210395_106257131	3300020582	Soil	MLTNQEPDWNIGDLTDPEIYAAIRYLEADPRTEDKQDASDHDTDNGVVICVSLYIVLVGCLAFVWFYWR
Ga0210401_101708813	3300020583	Soil	MLANYDPDSNIDDLTDTEIYAAIRYLEPGTTNADQVDADDQHEDNGVVICACLYVGLLICGAFLWFYWS
Ga0210401_101739762	3300020583	Soil	MLANYDPDWNIDDLTDTQIYAAIRYLEPGLTNADQLDADDQDKDNGVVICVVLYVALLICLAFLWFYWR
Ga0210401_107228092	3300020583	Soil	MLTNQEPDWNIDDLTDLEIYAAIRYLEADPRTEDKQDANKQDKDNGVVICVSLYIVLLGCLAFVWFYWR
Ga0215015_105201063	3300021046	Soil	MLANYDPDWNIDDLTDTEIYAAIRYLEPGLTNADQLDADDQNKDNGVVICVCLYVALLICSAFLWFYWR
Ga0210404_1000003563	3300021088	Soil	MLTNQEPDWNIDDLTDTEIYAAIHYLEPDPRTEDEQDANDQHKDNGVVICACLYILLLGCLGFVWFYWR
Ga0210404_100017574	3300021088	Soil	MLTNQEPDWNIDDLTDTEICAAIRYLETDRRTEDKHDADQQDKDNGVVICVCLYTLVLGCLAFMWFYWR
Ga0210406_101161265	3300021168	Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEAVPRTEDKQDANGQNKDNGVAICVSLYILLLGCLAFVWFYWR
Ga0210400_100101993	3300021170	Soil	MLTNYDPDSNIDNLTDIEIYAAIRYLEPDPANADEWNGDDQDKDNGVVICTCLYVAVLVCLAFLWLYWQ
Ga0210408_100311455	3300021178	Soil	MLTNQEPDWNIDDLTDPQIYAAIRYLEAHPRTEDKQDANDQDKDNGVVICICLYVLLLGCLALVWFYWR
Ga0210396_104426203	3300021180	Soil	DDLTDLEIYAAIRYLEADPRTEDKQDANDQDKDNGVVICLCLSVLLLGCLAFVWFYWR
Ga0210388_100916975	3300021181	Soil	MLANYDPDWNIDELTDAEIYAAIRYLEPGLTNADQLDADDQDKDNGVVICVFLYVALLICVVFLWFYWR
Ga0210393_102491462	3300021401	Soil	MLANYDPDWNIDDLTDTEIYAAIRYLEPGLTNADQLDGDDQDKDNGVVICVGLYVALLICLAFLWFYWR
Ga0210393_106881811	3300021401	Soil	MPTNYDPDSNIDDLTDIEIYVAICYLEPDPTNADDRHADDQDKNNGIVICVCLYVALFVCVAFMWFYWL
Ga0210389_112216491	3300021404	Soil	MLTNQEPDWNIDDLTDTEIHAAIRYLEGDRRTEGKQDANDQNKDNGVVICVSLYTLLLVCLALVWYYWR
Ga0210387_100717434	3300021405	Soil	MLTNYDPDSNIDNLTDIEIYAAIRYLEPDPANADERDGHDQDKDNGVVICTCLYVAVLVCLAFLWLYWQ
Ga0210394_102298891	3300021420	Soil	STCLMLANYDPDSNIDDLTDTEIYAAIRYLEPGTTNADQVDADDQHEDNGVVICACLYVGLLICGAFLWFYWS
Ga0210394_117987462	3300021420	Soil	MLTNQEPDWNIDDLTDRQIYAAIRYLEAGPRTENKEDTNDQDKDNGVVICVSLYILLLGCLAFVWFYWR
Ga0210384_102613103	3300021432	Soil	MLTNQEPDWNIDDLTDPQIYAAIRYLEAHPRTEDKQDANDQDKDNGVVICICLYGLLLGCLAFVWFYWR
Ga0210384_107550991	3300021432	Soil	MLANYDPDWNIDDLTDTEIYAAIRYLEPSLTNADQLEADDQDKDNGVVICVCLYAALLICLAFSWFYWR
Ga0210390_106585892	3300021474	Soil	MLTNQEPDWNIGDLTDPEIYAAIRYLEADPRTEDKQDANDQDKDNGVVICVSLYILQLGCLAFVQFYWR
Ga0210390_108220052	3300021474	Soil	MLADYDPDWNIDDLTDTEIYAAIRYLEPGLTNADHLDADDQDNDNGVVICVCLYVALLICLALLWFYWR
Ga0210390_113547121	3300021474	Soil	WRSSDVAVRSVLMLANYDPDRNIDYLTDTEIYAAIRYLEPGLTNAGQPDANDQDPTKDNGAVICVCLYVGLLMCFAFLWFYWR
Ga0210398_105306181	3300021477	Soil	MLADYDPDWNIDDLTDTEIYAAIRYLELGLTNADHLDADDQDKDNGVVICVCLYVALLICLAFLWFYWR
Ga0210402_118552611	3300021478	Soil	LMLTNQEPDWNIDDLTDTEIHAAIRYLEADRRTEGKQDANDQNKDNGVVICVSLYTLLLVCLALVWYYWR
Ga0210410_104525143	3300021479	Soil	MLTNQEPDWNIDDLTDTEIHAAIRYLEADRRTEDKQGANDQNKDNGVVICVCLYILLLGCLAFVWFCWR
Ga0210409_111156841	3300021559	Soil	MPANHEPDWNIDDLTDTEIYAAIHYLEADPRTREKQDANDQDKDNGVVICVCLYILVLGCLAFVWFYWR
Ga0242655_102609451	3300022532	Soil	NIDDLTDTEIYAAIRYLEAVPRTEDKQDANGQNKDNGVAICVSLYILLLGCLAFVWFYWR
Ga0212123_1001689412	3300022557	Iron-Sulfur Acid Spring	MLAYDPDWNIDDRTDTEIYAAIRYLEPGLTNAAQLDADDQDKDNGVVICVCLYVAMLLRFAFLWFYWR
Ga0212123_100576471	3300022557	Iron-Sulfur Acid Spring	MLANYDPDWNIDDRTDTEIYAAIRYLEPGLTNAAQLDADDQDKDNGVVICVCLYVAMLLCFAFLWFYWR
Ga0207646_100750116	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLTNQEPDWNIDDLTHTEIYAAIRYLEADPRTEDKQDANDQDKANGVVICVCLYILLLRCLAFVWFYWR
Ga0209131_10031141	3300026320	Grasslands Soil	MLTNQEPDWNIDDLSDPEIYAAIRYLEPGLTNADQLDAEDQDKDNVMVICVCLYTLLLGCLVFLWFYWR
Ga0257153_10551241	3300026490	Soil	IDDLTDTEIYAAIRYLEPGLTNAGQLDADDQDKDPGVVIWVCLYAALLICFAFLGFYWG
Ga0209214_10184042	3300027071	Forest Soil	MLTNQEPDWNIDDLTDPEIYAAIRYLEADPRTEDKQDANDHDTDNGVVICVSLYIVLLGCLAFVWFYWR
Ga0209622_10321412	3300027502	Forest Soil	MLTNQEPDWNIDDLTDAEVYAAIRYLEAAGTSTDEQNDDHGVVICVSLYIALLGCLAFVWLYWR
Ga0209008_10450142	3300027545	Forest Soil	MLTNYDPDSNFDDLTDIEICAAIRYLEPDPTNADEWHADDQDKFNGVVTCVCLYIALLVCLAFLWFYWL
Ga0209115_10815012	3300027567	Forest Soil	MLTNYDPDSNIEDLTDLEIYAAIRYLEPYPTNADGRAVDQDNDNGTVICFCLYIAVLVCLAFSWFYLL
Ga0209625_10619372	3300027635	Forest Soil	MLTNQEPDWNIDDLTDAEIHAAIHYLEADRRTKDKRDADEQDKDDGVVICVCLYTLLLGCLAFVWFCWK
Ga0209180_107293871	3300027846	Vadose Zone Soil	MLTDHDSDWNIDDITDAEIYVAIRYLEPAPRNPNRQDTDDDDKDYGVVICVCLYIALFVGLVCLWFYCR
Ga0209274_100799133	3300027853	Soil	MVTNQEPDWNIDNLTDPEIYAAIRYLEADPRTEDKQDANDPDKDNGVVICVSLYILLLGCLAFVRFYWR
Ga0209275_104359202	3300027884	Soil	MLTNYDPDSNIDNLTDIEIYAAIRYLEPDPANADERDGDDQDKDNGVVICTCLYVAVLVCLAFLWFW
Ga0209275_107817752	3300027884	Soil	MLTNQEPDWNIDDLTDPQIYAAIRYLEADPRTEDKQDANDQDKDNGVVICICLYVLLLGCLAFVWFHWR
Ga0209380_105283071	3300027889	Soil	MLPWLTNYDPDSNIDNLTDIEIYAAIRYLEPDPANADERDGDDQDKDNGVVICTCLYVAVLVCLAFLWLYWQ
Ga0209624_101075964	3300027895	Forest Soil	MLTNYDPDSNFDGLTDIEICAAIRYLEPDPTNADEWHADDQDKFNGVVTCVGLYIALLVCLAFLWFYWL
Ga0265356_10169641	3300028017	Rhizosphere	MPTNHDPDSNIDDLTDIEIYVAIRYLEPDPTNADEQQADDQDKDNGVVICVCLYIALFVCVAFMWFYWL
Ga0209526_101983232	3300028047	Forest Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEADPRTEDKQDADDQDKDNGVVICVCLYILVLGCLAFMWFYWR
Ga0308309_100911253	3300028906	Soil	MLANYDPDWNIDEITDAEIYAAIRYLEPGLTNADQLDADDQDKDNGVVICVFLYVALLICVVFLWFYWR
Ga0222749_103371172	3300029636	Soil	MLTNQEPDWNIDDLTDPQIYAAIRYLEAHPRTEDKQDANDQDKDNGVVICICLYVLLLGCLAFVWFYWR
Ga0222749_104848631	3300029636	Soil	MLTNQEPDWNIDELTDTEIYAAIRYLETNRRTEDKQEADDQDQDNSVVICVCLYILVLGCLAFMWFYWR
Ga0310686_1025016351	3300031708	Soil	MLANYDPDWNIDDLTDTEIYAAIRYLEPGLTNADQLDADDQDKDNGVVICVCLYVALLICLAFLWFCWR
Ga0310686_1072725452	3300031708	Soil	MPTNYDPDSNIDDLTDIEIYSAIRYLEPDPTNTDERHADDQDKDNGVVICVCLYVALSVCVAFMWFYRL
Ga0307476_100366973	3300031715	Hardwood Forest Soil	MQATLSRFESGCLMLANYNPDWNIDDLTDKEIYAAIRYLEPGLTNADQLDADDQDKDNGVAICVCLYVALLICLGFLWFYWM
Ga0307476_106814832	3300031715	Hardwood Forest Soil	MLANYDPDWNIDELTDAEIYAAIRYLEPGLTNADPLDADDQDKDNGVVICVFLYVALLICVVFLWFYWR
Ga0307476_107220681	3300031715	Hardwood Forest Soil	MLTNQEPDWNLDDLTDTEIYAAIRYLEPGLTNAHQLDADGHDKDNGVVICVCSYIFLLGCLAFMWFYWS
Ga0307476_110801411	3300031715	Hardwood Forest Soil	MLANYDPDWNIDDLTDTEIYAAIRYLEPGLTNADHLDADDQDNDNGVVICVCLYVALLICLALLWFYWR
Ga0307474_104101291	3300031718	Hardwood Forest Soil	MLTNYDPDWNIDDLTDTEIYAAIRYLEAGLTNGDQLDAADQDKDNGAVICACLYVAVLVSLAFLWFYWR
Ga0307474_105074862	3300031718	Hardwood Forest Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEADPRTEDNQDANDQDKDNGVVICVCLYILLLGCLAFVWFYWR
Ga0307474_106008041	3300031718	Hardwood Forest Soil	MLTNYDPDWNIDDLTDTEIYAAIRYLEVGLTNGDQLDADDPDKDNGAVICACLYVAVLVSLAFLWFYWR
Ga0307474_106694111	3300031718	Hardwood Forest Soil	MLADYDPDRNIDDLTDTEIYAAIRYLELGLTNADHLDADDQDNDKGVVICVCLYVALLICLALLWFYWR
Ga0307477_100095001	3300031753	Hardwood Forest Soil	MLTNQEPDWNIDDLTDLEIYAAIRYLEADPRTEDKQDANNQDKDNGVVICVSLYIVLLGCLAFVWFYWR
Ga0307477_100363984	3300031753	Hardwood Forest Soil	MLTNQEPDWNIDDLTDPEIYAAILYLEADPRTEDKQDANDQDKDNGVMICVSLYILLLGCLAFVWFYWR
Ga0307477_100893224	3300031753	Hardwood Forest Soil	MLTNQEPDWNIDDLTDPQIYAAIRYLEADPRTEDKQDANDHDKDNGVVICICLYVLLLGCLAFVWFYWR
Ga0307477_101447242	3300031753	Hardwood Forest Soil	MLTNQEPDWNIDGLTDTEIYAAIHYLEADPRTEDNQDANDQDKDNGVVICVCLYILLLGCLAFVWFYWR
Ga0307477_101757172	3300031753	Hardwood Forest Soil	VLTNQEPDWNIDDLTDTEIYAAIRYLEADPRTEDKQDKDNGVVICVCLYILLLGCLAFVWFYWR
Ga0307475_100281396	3300031754	Hardwood Forest Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEADPRTKDKQDANDQDKDNGVVICVGLYTLLLGCLAFLWFYWR
Ga0307475_100724384	3300031754	Hardwood Forest Soil	MLTNQEPDWNIDGLTDTEIYAAIHYLEADSRTEDNQDANDQDKDNGVVICVCLYILLLGCLAFVWFFWR
Ga0307475_103080222	3300031754	Hardwood Forest Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEADLRTEDKQDANDKNKDKDNGVMICVCLYSLLFGCLAFLWFYWR
Ga0307475_103882302	3300031754	Hardwood Forest Soil	MLTNQEPDWNIDDLTDTEIHAAIRYLEAAETRTEEQNTEEQNDDNGVVISVCLYIAMSVCLAFLWLYWK
Ga0307475_111266512	3300031754	Hardwood Forest Soil	MLTNQEPDWNIDDLTDTEICAAIRYLEADPKTEDKQDTNDRDKDNGTVICVGLYTLLLGSLAFLWFFWR
Ga0307475_115116031	3300031754	Hardwood Forest Soil	MLTNQEPDWNIDDLTDTEIYAAIRYLEAHPRTEDKQDANEQDKDNGVVICVCLYILLLGCLTFV
Ga0307478_1000381012	3300031823	Hardwood Forest Soil	MLTNQEPDWNLDDLTDTEIYAAICYLEPGLTNAHQLDADGQDKDNGVVICVCSYIFLLGCLAFMWFYWS
Ga0307478_102327392	3300031823	Hardwood Forest Soil	MLANYDPDWNIDELTDAEIHAAIRYLEPGLTNADQLDADDQDKDNGVVICVFLYVALLICVVFLWFYWR
Ga0307479_106237402	3300031962	Hardwood Forest Soil	LVLTNQEPDWNIDDLTDTEIYAAIRYLEADPRTEDKQDKDNGVVICVCLYILLLGCLAFVWFYWR
Ga0307479_108323542	3300031962	Hardwood Forest Soil	MLTNQEPDWNIDDLTDPEIYAAIRYLEADPRTEDKQDANDQDKDNGVVICLCLYVLLLGCLAFVWFYWR
Ga0307479_110514052	3300031962	Hardwood Forest Soil	MLANYDPDWNIDDPTDTEIYAAIRYLEPGLTNTDQLDADDQDKDPGVVTWICLYVALLICFAFLGFYWG
Ga0307479_116127141	3300031962	Hardwood Forest Soil	MLANHEPDWNIDDLTDTEIYAAIHYLEADPRTGEKQDANDQDKDNGVVICVCLYILVLGCLAFVWFYWR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081559

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences