NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209131_1002520

Scaffold Ga0209131_1002520


Overview

Basic Information
Taxon OID3300026320 Open in IMG/M
Scaffold IDGa0209131_1002520 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12413
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005426Metagenome / Metatranscriptome401Y
F026352Metagenome / Metatranscriptome198Y
F089218Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209131_10025203F005426N/AMPGGKIPGDLRASEMVEERKFAILFAATILAARRLIDMDPDKPSMAKQFFVDRAIEDAAFILERIDARWPAILNSFSARQE
Ga0209131_10025204F089218GGAGMPSYDSFMCPNCEDYFRVIWPECLPGHYHLCGKIKIKCPDCQEVTDVYDFLIDRHVRSGPEYSNR
Ga0209131_10025206F026352AGGAGVAMETQREVAEYFRSLELALNEQEKKGTPKGDPTYSRIYTQLARDISQIGIARDELREAAKICGHLSTFERLEHLMKKPVR

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