Scaffold Ga0209131_1002520

Overview

Basic Information

• Taxon OID: 3300026320
• Scaffold ID: Ga0209131_1002520
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12413
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005426	Metagenome / Metatranscriptome	401	Y
F026352	Metagenome / Metatranscriptome	198	Y
F089218	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209131_10025203	F005426	N/A	MPGGKIPGDLRASEMVEERKFAILFAATILAARRLIDMDPDKPSMAKQFFVDRAIEDAAFILERIDARWPAILNSFSARQE
Ga0209131_10025204	F089218	GGAG	MPSYDSFMCPNCEDYFRVIWPECLPGHYHLCGKIKIKCPDCQEVTDVYDFLIDRHVRSGPEYSNR
Ga0209131_10025206	F026352	AGGAG	VAMETQREVAEYFRSLELALNEQEKKGTPKGDPTYSRIYTQLARDISQIGIARDELREAAKICGHLSTFERLEHLMKKPVR