Metagenome / Metatranscriptome Family F089218

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089218
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	66 residues
Representative Sequence	MPSYDSFMCPNCENHFRVIWPEPLPTHHHLCSKIKMKCPDCGEVTELYDFLIDKIMQAPENG
Number of Associated Samples	79
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.78 %
% of genes near scaffold ends (potentially truncated)	74.31 %
% of genes from short scaffolds (< 2000 bps)	78.90 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.560 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (57.798 % of family members)
Environment Ontology (ENVO)	Unclassified (53.211 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.798 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.89% β-sheet: 15.56% Coil/Unstructured: 75.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01904	DUF72	2.75
PF02371	Transposase_20	1.83
PF13031	DUF3892	1.83
PF14534	DUF4440	1.83
PF13490	zf-HC2	0.92
PF00484	Pro_CA	0.92
PF00999	Na_H_Exchanger	0.92
PF10137	TIR-like	0.92
PF01381	HTH_3	0.92
PF03965	Penicillinase_R	0.92
PF00589	Phage_integrase	0.92
PF08308	PEGA	0.92
PF07238	PilZ	0.92
PF02311	AraC_binding	0.92
PF03544	TonB_C	0.92
PF13620	CarboxypepD_reg	0.92
PF00027	cNMP_binding	0.92
PF13545	HTH_Crp_2	0.92
PF03050	DDE_Tnp_IS66	0.92
PF00155	Aminotran_1_2	0.92
PF00072	Response_reg	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	2.75
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.83
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.92
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.92
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.92
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.92
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.92
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.92
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.92
COG3682	Transcriptional regulator, CopY/TcrY family	Transcription [K]	0.92
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.48 %
Unclassified	root	N/A	26.61 %
Viruses	superkingdom	All Organisms → Viruses	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.56 %
Unclassified	root	N/A	26.61 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	61.47 %
Unclassified	root	N/A	26.61 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	40.37 %
Unclassified	root	N/A	26.61 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.75 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.45 %
Unclassified	root	N/A	26.61 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.75 %
Acidobacteria bacterium 13_1_20CM_3_58_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_58_11	0.92 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.45 %
Unclassified	root	N/A	26.61 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.75 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.92 %
Acidobacteria bacterium 13_1_20CM_3_58_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_58_11	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.45 %
Unclassified	root	N/A	26.61 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.92 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.92 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.92 %
Acidobacteria bacterium 13_1_20CM_3_58_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_58_11	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.45 %
Unclassified	root	N/A	26.61 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.92 %
Terriglobus albidus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus albidus	0.92 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.92 %
Acidobacteria bacterium 13_1_20CM_3_58_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_58_11	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.45 %
Unclassified	root	N/A	26.61 %
Granulicella sp. dw_53	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	0.92 %
Terriglobus albidus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus albidus	0.92 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.92 %
Acidobacteria bacterium 13_1_20CM_3_58_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_58_11	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002886\|JGI25612J43240_1079325	Not Available	518	Open in IMG/M
3300002917\|JGI25616J43925_10298758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_58_11	599	Open in IMG/M
3300005166\|Ga0066674_10075400	Not Available	1548	Open in IMG/M
3300005172\|Ga0066683_10741538	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300005179\|Ga0066684_11085550	Not Available	513	Open in IMG/M
3300005446\|Ga0066686_10636866	Not Available	724	Open in IMG/M
3300005446\|Ga0066686_10850644	Not Available	603	Open in IMG/M
3300005447\|Ga0066689_10480605	Not Available	782	Open in IMG/M
3300005540\|Ga0066697_10085863	All Organisms → cellular organisms → Bacteria → Acidobacteria	1821	Open in IMG/M
3300005554\|Ga0066661_10226018	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300005555\|Ga0066692_11028830	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300005556\|Ga0066707_10248987	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1158	Open in IMG/M
3300005559\|Ga0066700_10027315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3290	Open in IMG/M
3300005561\|Ga0066699_10498367	All Organisms → cellular organisms → Bacteria → Acidobacteria	871	Open in IMG/M
3300005575\|Ga0066702_10773517	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300005598\|Ga0066706_10494566	All Organisms → cellular organisms → Bacteria → Acidobacteria	974	Open in IMG/M
3300006031\|Ga0066651_10293530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	867	Open in IMG/M
3300006032\|Ga0066696_10435877	Not Available	857	Open in IMG/M
3300006034\|Ga0066656_10938359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300006176\|Ga0070765_100025525	All Organisms → cellular organisms → Bacteria	4502	Open in IMG/M
3300006796\|Ga0066665_11200831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300006797\|Ga0066659_11897419	Not Available	506	Open in IMG/M
3300007258\|Ga0099793_10038377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2071	Open in IMG/M
3300007258\|Ga0099793_10413039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300007265\|Ga0099794_10748071	Not Available	522	Open in IMG/M
3300009012\|Ga0066710_100523174	All Organisms → Viruses → Predicted Viral	1791	Open in IMG/M
3300009088\|Ga0099830_10087892	All Organisms → cellular organisms → Bacteria → Acidobacteria	2295	Open in IMG/M
3300009089\|Ga0099828_11904473	Not Available	521	Open in IMG/M
3300009090\|Ga0099827_10652222	All Organisms → cellular organisms → Bacteria → Acidobacteria	909	Open in IMG/M
3300010322\|Ga0134084_10107787	Not Available	897	Open in IMG/M
3300010323\|Ga0134086_10441199	Not Available	530	Open in IMG/M
3300011269\|Ga0137392_10660327	All Organisms → cellular organisms → Bacteria → Acidobacteria	866	Open in IMG/M
3300011270\|Ga0137391_10056213	All Organisms → cellular organisms → Bacteria → Acidobacteria	3361	Open in IMG/M
3300011271\|Ga0137393_10538490	Not Available	1002	Open in IMG/M
3300012096\|Ga0137389_10677728	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	886	Open in IMG/M
3300012198\|Ga0137364_10419137	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1003	Open in IMG/M
3300012198\|Ga0137364_11132303	Not Available	588	Open in IMG/M
3300012200\|Ga0137382_10070995	All Organisms → cellular organisms → Bacteria	2231	Open in IMG/M
3300012200\|Ga0137382_10090445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2002	Open in IMG/M
3300012200\|Ga0137382_10501514	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300012200\|Ga0137382_10704855	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300012202\|Ga0137363_10003626	All Organisms → cellular organisms → Bacteria → Acidobacteria	9400	Open in IMG/M
3300012202\|Ga0137363_10249176	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1443	Open in IMG/M
3300012202\|Ga0137363_10373560	All Organisms → cellular organisms → Bacteria → Acidobacteria	1184	Open in IMG/M
3300012203\|Ga0137399_10037926	All Organisms → cellular organisms → Bacteria	3395	Open in IMG/M
3300012203\|Ga0137399_10174742	All Organisms → cellular organisms → Bacteria → Acidobacteria	1731	Open in IMG/M
3300012203\|Ga0137399_10192243	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1653	Open in IMG/M
3300012203\|Ga0137399_11322810	Not Available	605	Open in IMG/M
3300012207\|Ga0137381_11635590	Not Available	535	Open in IMG/M
3300012211\|Ga0137377_10743787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	914	Open in IMG/M
3300012211\|Ga0137377_11519936	Not Available	595	Open in IMG/M
3300012285\|Ga0137370_10074469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1870	Open in IMG/M
3300012285\|Ga0137370_10116571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1519	Open in IMG/M
3300012361\|Ga0137360_11419215	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300012361\|Ga0137360_11615349	Not Available	553	Open in IMG/M
3300012362\|Ga0137361_11963944	Not Available	501	Open in IMG/M
3300012363\|Ga0137390_10071882	All Organisms → cellular organisms → Bacteria	3390	Open in IMG/M
3300012582\|Ga0137358_10037117	All Organisms → cellular organisms → Bacteria → Acidobacteria	3218	Open in IMG/M
3300012683\|Ga0137398_10161710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1459	Open in IMG/M
3300012918\|Ga0137396_10212865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1422	Open in IMG/M
3300012918\|Ga0137396_10403104	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300012918\|Ga0137396_10801336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300012918\|Ga0137396_11187520	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300012925\|Ga0137419_10026198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3502	Open in IMG/M
3300012925\|Ga0137419_10436782	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1029	Open in IMG/M
3300012925\|Ga0137419_11964219	Not Available	503	Open in IMG/M
3300012927\|Ga0137416_10317554	All Organisms → cellular organisms → Bacteria → Acidobacteria	1296	Open in IMG/M
3300012927\|Ga0137416_10533921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300012927\|Ga0137416_11117840	Not Available	707	Open in IMG/M
3300012927\|Ga0137416_11358018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300015054\|Ga0137420_1248745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300015241\|Ga0137418_10055338	All Organisms → cellular organisms → Bacteria	3639	Open in IMG/M
3300015241\|Ga0137418_10119036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2356	Open in IMG/M
3300015241\|Ga0137418_10175170	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus albidus	1872	Open in IMG/M
3300015241\|Ga0137418_10392756	All Organisms → cellular organisms → Bacteria → Acidobacteria	1134	Open in IMG/M
3300015241\|Ga0137418_10489386	Not Available	986	Open in IMG/M
3300015245\|Ga0137409_10003925	All Organisms → cellular organisms → Bacteria → Acidobacteria	15722	Open in IMG/M
3300015245\|Ga0137409_11556245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300018433\|Ga0066667_10188322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1503	Open in IMG/M
3300018468\|Ga0066662_12943059	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300018482\|Ga0066669_10349660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1227	Open in IMG/M
3300020199\|Ga0179592_10001722	All Organisms → cellular organisms → Bacteria → Acidobacteria	8915	Open in IMG/M
3300020579\|Ga0210407_10263723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1343	Open in IMG/M
3300020580\|Ga0210403_10226538	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1533	Open in IMG/M
3300020581\|Ga0210399_11153779	Not Available	617	Open in IMG/M
3300021170\|Ga0210400_10338933	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	1237	Open in IMG/M
3300021401\|Ga0210393_10740648	Not Available	801	Open in IMG/M
3300024330\|Ga0137417_1275641	All Organisms → cellular organisms → Bacteria	2761	Open in IMG/M
3300026285\|Ga0209438_1137507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300026307\|Ga0209469_1019663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2387	Open in IMG/M
3300026317\|Ga0209154_1227396	Not Available	689	Open in IMG/M
3300026320\|Ga0209131_1002520	All Organisms → cellular organisms → Bacteria	12413	Open in IMG/M
3300026328\|Ga0209802_1119202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1161	Open in IMG/M
3300026331\|Ga0209267_1123387	All Organisms → cellular organisms → Bacteria → Acidobacteria	1089	Open in IMG/M
3300026342\|Ga0209057_1085069	Not Available	1326	Open in IMG/M
3300026538\|Ga0209056_10596880	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300026555\|Ga0179593_1104349	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1620	Open in IMG/M
3300026557\|Ga0179587_10129052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1559	Open in IMG/M
3300026557\|Ga0179587_10892031	All Organisms → cellular organisms → Bacteria → Acidobacteria	586	Open in IMG/M
3300027643\|Ga0209076_1113004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300027643\|Ga0209076_1120769	Not Available	740	Open in IMG/M
3300027738\|Ga0208989_10267741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300027875\|Ga0209283_10292479	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1075	Open in IMG/M
3300028536\|Ga0137415_10382976	All Organisms → cellular organisms → Bacteria → Acidobacteria	1210	Open in IMG/M
3300030991\|Ga0073994_12349442	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300031962\|Ga0307479_10116636	Not Available	2601	Open in IMG/M
3300031962\|Ga0307479_10118226	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2583	Open in IMG/M
3300032180\|Ga0307471_100161501	All Organisms → cellular organisms → Bacteria	2176	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	98.17%
Loam	Environmental → Terrestrial → Soil → Loam	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	59.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	30.28%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	57.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	22.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25612J43240_10793251	3300002886	Grasslands Soil	MPSYDSFMCPNCEDHFRVIWPECLPGYYHLCSKIKIKCPDCQEVTEVYDFLIDRHV
JGI25616J43925_102987582	3300002917	Grasslands Soil	MPTYDSFMCPNCEHHFRVIWPDPLPTHYHLCSKIKIKCPDCQEVTEIYDFLIDRIM
Ga0066674_100754001	3300005166	Soil	MPSYDSFTCPNCEHYFRVIWPDPMLSYHDCCSKIEMKCPDCGEVTELYDYLIDKILQAPEPGIPSEHC*
Ga0066683_107415381	3300005172	Soil	MPSYDSFMCPNCEHYFRVIWPDPMLSYHDCCSKIEMKCPDCGEVTELYDYLIDKILQAPEPGIPSEHC*
Ga0066684_110855501	3300005179	Soil	MPSYDSFMCPNCENHFRVIWPEAVATHYHLCSKIKMKCLDCGEVTELYDYLIDKILQAPEPG
Ga0066686_106368661	3300005446	Soil	MPSYDSFMCPNCEHYFRMIWPDPLPSCHDCHSKIKMKCPDCGEFTELYDYLIDKILQAPEPGIPSEHC*
Ga0066686_108506441	3300005446	Soil	MPSYDSFMCPNCEGHFRVIWPEPLPNYTDPCSKIKMKCPDCGEVTELYAYLIDRILQAPEPCIPSIEVLSISPRDPNPDPYAR
Ga0066689_104806051	3300005447	Soil	CPNCEHYFRVIWPDPMLSYHDCCSKIEMKCPDCGEVTELYDYLIDKILQAPEPGIPSEHC
Ga0066697_100858631	3300005540	Soil	MESYKMFMCPNCEGHFRVIWPDPLPNHYHLCSKIKIKCPDCQDVTELYDFLIDKILQAPEPG
Ga0066661_102260182	3300005554	Soil	MPSYDSFMCPNCEDYFRVIWPNPIPSHHDPCSKIRMKCPDCGEVTELYDFLIDKIMQAPEPGIPSVEVLSISPRDPNPDP
Ga0066692_110288301	3300005555	Soil	MPSYDSFMCPNCEQCFRVNSPDPLPNYHDCCSKIKIKCPDCGEVTELYDYLIDKIMQA
Ga0066707_102489873	3300005556	Soil	MPSYDSFMCPNCEGHFRVIWPKPLPNYSDPCSKIKMKCPDCGEVTELYDYLIDKILQAPEPGIPSVEVLSISPRDPNPDP
Ga0066700_100273153	3300005559	Soil	MPSYDSFMCPNCEQCFRVNSPDPLPNYHDCCSKIKIKCPDCGEVTELYDYLIDKIMQAPEPGIPSEHC*
Ga0066699_104983672	3300005561	Soil	MESHRMYMCPSCEGHFRVIWPDPLPSHYHVCSKIRIKCPDCRDVTELYDFLIDRIMCAPDPSIPAVEVLSISPRDPNPDPNA
Ga0066702_107735171	3300005575	Soil	MPSYDSFMCPNCEDYFRVIWPNPIPSHHDPCSKIRMKCPDCGEVTELYDFLID
Ga0066706_104945663	3300005598	Soil	MPSYDSFMCPNCEGHFRVIWPKPLPNYSDPCSKIKMKCPDCGEVTELYDYLIDKILQ
Ga0066651_102935303	3300006031	Soil	MPSYDSFTCPNCEHYSRVIRPDPLPSHYHLCSKIKMKCPDCNEVTELYDFLIDRIMCAPDPSIPTVDVLSISPRDPNPDP
Ga0066696_104358771	3300006032	Soil	AGVPMPSYDSFTCPNCEHYFRVIWPDPMLSYHDCCSKIEMKCPDCGEVTELYDYLIDKILQAPEPGIPSEHC*
Ga0066656_109383592	3300006034	Soil	MPSYDSFMCPNCEHYFRMIWPDPLPSCHDCHSKIKMKCPDCGEFTELYDYLIDKILQA
Ga0070765_1000255252	3300006176	Soil	MPSYDSFVCPGCEHYFRVVWPGPLPSHYHLCSKITMKCPDCGEVTELYAFLIDKIAKAPAPGNSFHRSFVDLSP*
Ga0066665_112008311	3300006796	Soil	MPSHDSFMCPNCEHHFRVIWPDPLPSYHDCCSKIKIQCPDCQEVIEIYDFLIDKILQAPEPGIPSVEVLSISPPDPNP
Ga0066659_118974192	3300006797	Soil	MESYKMFMCPNCESHFRVIWPDPLPNHYHLCSKIKIKCPDCQDVTELYDFLIDRIMCAPDPSIPI
Ga0099793_100383775	3300007258	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEALPSHYHPCSKIKMKCPDCNEVTELYDFLIDRITQPPD
Ga0099793_104130391	3300007258	Vadose Zone Soil	MESYDSFMCPNCENHFRVIWPDPLPTHHHLCSKIKIKCPDCQDVIELYDFLIDRVMCAPDPSVPTVQVESISPRDPNPEPN
Ga0099794_107480711	3300007265	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEPLPTHYHLCSKIKIKCPDCNEVTELYDFLIDRITQPPDPSIPTVDVL
Ga0066710_1005231741	3300009012	Grasslands Soil	MPSYDSFMCPNCEGYFRVIWPDPMPSHHDCCSKVKIKCPDCGDVTELYDYLIDKILQAPEPGIPSVEVLSI
Ga0099830_100878924	3300009088	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEPLPTHYHLCSKIKIKCPDCGEVTELYDF
Ga0099828_119044732	3300009089	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPDPLPSHYHLCSKIKIKCPDCQDVTELYDFL
Ga0099827_106522221	3300009090	Vadose Zone Soil	MESYKMFMCPNCENHFRVIWPEPVPTHHHLCSKIKMKCPDCNEVTELYD
Ga0134084_101077871	3300010322	Grasslands Soil	LLPAQIHDAGVPMPSYDSFMCPNCENYFHVIWPDPLPSYHDPCSKIKMKCPDCGEFTELYDYLIDKILQAPEPGIPSEHC*
Ga0134086_104411991	3300010323	Grasslands Soil	ENAGVPMPSYDSFTCPNCEHYFRVIWPDPMLSYHDCCSKIEMKCPDCGEVTELYDYLIDKILQAPEPGIPSEHC*
Ga0137392_106603272	3300011269	Vadose Zone Soil	MESYKMFMCPNCENHFRVIWPEPVPTHHHLCSKIKMKCPDCNEVTELYDFLIDRIMCAPDPSIPSVAILSISP
Ga0137391_100562135	3300011270	Vadose Zone Soil	MESYKMFMCPNCENHFRVIWPEPVPTHHHLCSKIKMKCPECNEVTELYDFLIDRI
Ga0137393_105384901	3300011271	Vadose Zone Soil	MCPNCEHHFRVIWPEPVPTHHHLCSKIKIKCPDCGEVTKLYDFLIDRIMCAPEPGIPSVEVLSISPRDPNPDPAARSHYWQK
Ga0137389_106777281	3300012096	Vadose Zone Soil	MCPNCEHHFRVIWPECLPTHYHLCSKIKIKCPDCGEVTELYDFLIDEIMQAL
Ga0137364_104191371	3300012198	Vadose Zone Soil	MCPNCEHHFRVIWPEPVPAHHHLCSKIRMKCPDCQEETEIYDFLIDRIMRAPDPSIPTVEVLSISPRDPNPDPNARSNYWQMV
Ga0137364_111323032	3300012198	Vadose Zone Soil	EFSMPSYDSFMCPNCEHHFRVIWPDPLPNHYHLCSKIKMKCPDCQDVTELYDFLIDKILQAPEPGIPSVEVLSISPQGHYG*
Ga0137382_100709951	3300012200	Vadose Zone Soil	MPSYDSFMCPNCEGHFRVIWPEPLPNYTDPCSKVKMKCPNCGEVTELYAYLIDRILQAPEPCIPSIEVLSISPRDPNPDP
Ga0137382_100904453	3300012200	Vadose Zone Soil	VSELRTSFPRDLPEPVPTHHHLCSKIKMKCPDCAEVTELYDFLIDKILQSPEPGIPSVEVLSISPRDPNPDPNARSNYWQMV*
Ga0137382_105015142	3300012200	Vadose Zone Soil	MPSYDSFMCPNCESYFRVIWPEPVPTHHHLCSKIKMKCPDCGEVSELYDFLIDRIMCTPD
Ga0137382_107048551	3300012200	Vadose Zone Soil	MPSYDSFMCPNCENHFRVIWPEPLPTHHHLCSKIKMKCPDCGEVTELYDFLIDKIMQAPENG
Ga0137363_100036269	3300012202	Vadose Zone Soil	MPSYDSFMCPNCEDYFRVIWPECLPGHYHLCGKIKIKCPDCQEVTDVYDFLIDRHVRSGPEYSNR*
Ga0137363_102491761	3300012202	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPDPMPSYHDPCSKIKMKCPDCGEVTELYDFLIDR
Ga0137363_103735603	3300012202	Vadose Zone Soil	MPSYDSFMCPNSEGHFRVIWPEPLPSHYHLCGKIEIKCPDCQEVTELYDFPYR*
Ga0137399_100379263	3300012203	Vadose Zone Soil	MCPNCEGHFRVIWPEPLPNYTDPCSKVKMKCPNCGEVTELYAYLIDRILQAPEPCIPSIEVLSISPRDP
Ga0137399_101747424	3300012203	Vadose Zone Soil	MCPNCEHHFRVIWPEPIPTHHHLCSKIKMKCPDCQDVTELYDFLIDRIMCVPDPGIPTVDVLSISPRDLNTDPNARSNYW*
Ga0137399_101922432	3300012203	Vadose Zone Soil	MPSYDSFMCPNCEGHFRVIWPDPLPSHYHLCSKIKIGCPDCHEVTELYDFLIDRIMQPPDPSLP
Ga0137399_113228101	3300012203	Vadose Zone Soil	MPSYDSFMCPNCEHHFHVIWPDPLPSYCDPCSKIKIKCPDCQEVTELYDFLIDKIIQAPEPGIPSVEVLSIS
Ga0137381_116355901	3300012207	Vadose Zone Soil	MCPNCEHHFRVIWPEPLPTHHHLLSKIKMKCPDCGEVTELYDYLIDK
Ga0137377_107437873	3300012211	Vadose Zone Soil	HFRVIWPDPLPSHYHLCSKIKMKCPDCNEVTELYDFLIDRITQPPDPSIPTVDVLSISPRV*
Ga0137377_115199361	3300012211	Vadose Zone Soil	MCPNCEHHFRVIWPDPMPSHHDPCSKIKMKCPDCGEVTELYDFLIDRIMCAPDPSIPTVEVLSISPRDLNPDPNARSNYWQM
Ga0137370_100744691	3300012285	Vadose Zone Soil	MQEFSMPSYDSFMCPNCEHHFRVIWPDPLPNHYHLCSKIKMKCPDCQDVTELYDFLIDKILQAPEPGIPSVEVLSISPQGHYG
Ga0137370_101165712	3300012285	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVMWPDPLPSYHDPCSKIRMKCPDCNEVTDLYDFLIDRIMCAPDPSIPTVEVLSISSRDPNPDP
Ga0137360_114192152	3300012361	Vadose Zone Soil	FPMPSYDSFMCPNCEHYFRVIWPDPLPSYHDCCSKIKMKCPDCGEVTELYDFLIDRIM*
Ga0137360_116153492	3300012361	Vadose Zone Soil	MQEFPMPSYDSFMCPNCEGHFRVIWPEPLPKYTDPCSKVRMKCPDCCEVTELYAYLIDRILQAPDPGVPKIEVLSISPRDPNPDPY
Ga0137361_119639442	3300012362	Vadose Zone Soil	MPSYDSFMCPNCECHFRVIWPEPLPSHYHFCSKIKLKCPDCQEVTELYDFLIDRIMCAPDPSIPTVEV
Ga0137390_100718824	3300012363	Vadose Zone Soil	MPSYRSFMCVNCENYFQVIWPNPLPSYYDKCSKIKIECPECHEVNELYDYLLDTILQAPEPGLARRAANIHLTA*
Ga0137358_100371171	3300012582	Vadose Zone Soil	MPSYDSFMCPNCEGHFRVIWPEPLPSHYHLCSKIEIKCPDCQEVTELYDFPYR*
Ga0137398_101617103	3300012683	Vadose Zone Soil	MQEFPMPSYDSFMCPNCENHFRVIWPECLPTHYHLLSKIKMKCPDCDEVTELYDFLIDKIMQVPEPVIPSVEVLSISPRD
Ga0137396_102128654	3300012918	Vadose Zone Soil	MPSYDSFMCTNCEHHFRVIWPEALPSHYHPCSKIKMKCPDCNEVTELYDFLID
Ga0137396_104031043	3300012918	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEPVPTHYHLCSKIKMKCPDCNEVTELYDFLIDR
Ga0137396_108013361	3300012918	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEPLPSHYHFCSKIKMKCPDCNEVTELYDFLIDRNMC
Ga0137396_111875201	3300012918	Vadose Zone Soil	MPSYESFMCPNCEDHFRVIWPEPLPTHYHLCSKIKMKCPDCKEVTELYDFLIDRITQPPDPSIPTVEVLSISPRDPNPDP
Ga0137359_101785085	3300012923	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEPVPTHYHPCSKIKIKCPDCQEVTEI
Ga0137419_100261983	3300012925	Vadose Zone Soil	MPSYDSFMCPNCEGHFRVTWPDPMPSYHDPCSKIKMKCPDCGEITELYDYLIDKIL*
Ga0137419_104367822	3300012925	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEPLPTHYHLLSKIKMKCPDCGEVTELTIISSTK*
Ga0137419_119642191	3300012925	Vadose Zone Soil	MPSYDSFMCPNCEGHFRVIWPEPLPNYTDPCSKIKMKCPACGEVTELYAYLIDRILQAPE
Ga0137416_103175541	3300012927	Vadose Zone Soil	MQEFSMPSYDSFMCPNCEHHFRVIWPEPVPTHHHLCSKIKIECPDCHEVTELYDFLIDRITQHPDPSIPTVDVLSISPRDPNP
Ga0137416_105339212	3300012927	Vadose Zone Soil	MQSYKMFMCPNCECHFRVIWPGPIPTHYDLCSKIKMKCPDCQELTELYDFLIDRIMCTPDPSIPTVEVLSISPRDPNPDPNARS
Ga0137416_111178401	3300012927	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEPVPSHYHLCSKIKIKCPDCQDVTELYDFLIDKIMQAPEPGIPSVEVLSISARDP
Ga0137416_113580182	3300012927	Vadose Zone Soil	MPTYDSFMCPNCEHHFRVIWPNPMPTHHDCWSKIKMKCPDCGEVTELY
Ga0137420_12487451	3300015054	Vadose Zone Soil	MPSYDSFMCPNCECHFRVIWPEPLPSHYHFCSKIKLKCPDCQEVTELYDFLID
Ga0137418_100553385	3300015241	Vadose Zone Soil	MPSYDSFMCPNCEDHFRVIWPECLPGHYHLCSKIKIKCPDCQEVTEVYDFLIDRHVRSGPEYSNR*
Ga0137418_101190365	3300015241	Vadose Zone Soil	MCPNCEHHFRVIWPEPVPIHHHLCSKIKMECPDCHEVTELYDFLIDRIMQPPDPSLPTVEVLSISPRDPNPDPNARSNYWQ
Ga0137418_101751703	3300015241	Vadose Zone Soil	MPSYDSFMCPNCEHHFHVIWPDPLPSYCDPCSKIKIKCPDCQEVTELYDFLIDKII
Ga0137418_103927562	3300015241	Vadose Zone Soil	MPSYDSFMCPNCEHYFRVNWPDPVPSYHDPCSKIKMKCPDCGEVTELYDYLIDKIMQAPQPGIPSVEVLS
Ga0137418_104893861	3300015241	Vadose Zone Soil	MPSYDSFMCPNCEGHFRVIWPEPLPNYTDPCSKIKMKCPACGEVTELYAYLIDRILQAPEPGTPSI
Ga0137409_1000392513	3300015245	Vadose Zone Soil	MPSYDSFMCPNCEDHFRVIWPECLPGYYHLCSKIKIKCPDCQEVTEVYDFLIDRHVRSGPEYSNR*
Ga0137409_115562451	3300015245	Vadose Zone Soil	MCPNCEGHFRVIWPEPLPNYTDPCSKIKMKCPDCGEVTELYAYLIDRILQAPEPCIASIEVLSISPRDPNPDPY
Ga0066667_101883223	3300018433	Grasslands Soil	MPSYDSFMCPNCEHYFRMIWPDPLPSCHDCHSKIKMKCPDCGEFTELYDYLIDKILQAPEPGIPSEHC
Ga0066662_129430592	3300018468	Grasslands Soil	MPSYDSFMCPNCEGHFRVIWPEPLPNYTDPCSKIKMKCPDCGEVYELYDYLIDRILKDP
Ga0066669_103496602	3300018482	Grasslands Soil	MCPNCEHHFRVIWPDPLPTHHHLCSKIKIKCPDCGEVTELYDFLIDKIMQAPDPSIPTVEVLSISPRDPNPDPHA
Ga0179592_100017222	3300020199	Vadose Zone Soil	MPSYDSFMCPNCEGHFRVIWPEPLPSHYHLCSKIEIKCPDCQEVTELYDFPYR
Ga0210407_102637231	3300020579	Soil	FRVVWPDPVPTRLHLCSKIKMKCPDCNEVTELYDFLIDRITQPPDPSIPTVDVLSISPRDLNRP
Ga0210403_102265382	3300020580	Soil	MPSYDSFMCPNCEGHFRVVWPDPVPTHLHLCSKIKMKCPDCNEVTELYDFLIDRITQPPDPSIPTVDVLSISPRDLNRP
Ga0210399_111537791	3300020581	Soil	MPSYDSFMCPNCEGHFRVVWPDPVPTRLHLCSKIKMKCPDCNEVTELYDFLIDRITQPPDPSIPTVDVLSISPRDLNRP
Ga0210400_103389332	3300021170	Soil	MPSYDSFMCPNCEGHFRVIWPEPLPNCTDPCSKVRMKCPVCGEVTELYAYLIDRILQAPEQGIPSAEVS
Ga0210393_107406481	3300021401	Soil	MPSYKSFMCPNCEHYFRVIWPDPMPSNYDPLSKIKMKCPNCGEVTELYDYLLSR
Ga0137417_12756411	3300024330	Vadose Zone Soil	VPEYKMYMCPNCEHHFRVIWPDPLPSYQDPCSKIKMKCPDCQEVTDLYDFLIDRIMCAP
Ga0209438_11375072	3300026285	Grasslands Soil	MPSYDSFMCPNCEDHFRVIWPECLPGYYHLCSKIKIKCPDCQEVTEVYDFLIDRHVRS
Ga0209469_10196633	3300026307	Soil	MPSYDSFTCPNCEHYFRVIWPDPMLSYHDCCSKIEMKCPDCGEVTELYDYLIDKILQAPEPGIPSEHC
Ga0209154_12273962	3300026317	Soil	MPSYDSFMCPTCEGHFRVIWPDPLPNHYHLCSKIKIKCPDCQDVTELYDFLIDKILQAPEPGIPS
Ga0209131_10025204	3300026320	Grasslands Soil	MPSYDSFMCPNCEDYFRVIWPECLPGHYHLCGKIKIKCPDCQEVTDVYDFLIDRHVRSGPEYSNR
Ga0209802_11192023	3300026328	Soil	MPSYDSFMCPNCEQCFRVNSPDPLPNYHDCCSKIKIKCPDCGEVTELYDYLIDKIMQAPEPGIPSEHC
Ga0209267_11233871	3300026331	Soil	MEGYKMFMCPNCEGHFRVIWPDPLPSHYHLYSKIKIKCPDCRDVTELYDFLIDRIMCAPDPSIPTV
Ga0209057_10850691	3300026342	Soil	MESYKMFMCPNCEGHFRVIWPDPLPNHYHLCSKIKIKCPDCQDVTELYDFLIDKILQAPEPGIP
Ga0209056_105968801	3300026538	Soil	MPSYDSFMCPNCEHHFRVIWPEPLPTHYHLCSKIKIKCPDCQEVTELYDEM
Ga0179593_11043492	3300026555	Vadose Zone Soil	MPSYKMYMCPNCEHHFRVIWPDPLPTYYHLCSKIKMKCHDCGEVTELYDFLIDRIMCAPDPSIPTVERTVYFSP
Ga0179587_101290521	3300026557	Vadose Zone Soil	MPSYDSFMCPNCEGHFRVIWPEPLPNYTDPCSKIKMKCPDCGEVTELYAYLID
Ga0179587_108920312	3300026557	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEPVPTHHHLCSKIKMKCPDCNEVTELYDFLIDRNMCAPDPSIPTVDV
Ga0209076_11130041	3300027643	Vadose Zone Soil	MPSYESFMCPNCEHHFRVIWPEPLPTHYHLCSKIKIKCPDCQEVTELYDFLIDRIMCAP
Ga0209076_11207691	3300027643	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEPVPSHYHLCSKIKIKCPDCQDVTELYDFLIDKIMQAPE
Ga0208989_102677412	3300027738	Forest Soil	MPSYDSFMCPNCEGHFRVIWPEPLPTHHHLCSKIKMKCPDCGEVTELYDFLIDRI
Ga0209283_102924792	3300027875	Vadose Zone Soil	MPSYRSFMCVNCENYFQVIWPNPLPSYYDKCSKIKIECPECHEVNELYDYLLDTILQAPEPGLARRAANIHLTA
Ga0137415_103829763	3300028536	Vadose Zone Soil	MPSYDSFMCPNCEHHFRVIWPEPVPTHHHLCSKIKIECPDCHEVTELYDFLIDRITQHPDPSIPTVDVLS
Ga0073994_123494422	3300030991	Soil	MPSYDSFMCPNCEHHFRVIWPDPMPSYHDPCSKIKMKCPDCGEVTELYDYLITKILQAPENGIPSVEVLSIS
Ga0307479_101166361	3300031962	Hardwood Forest Soil	MPSYDSFMCPNCEGHFRVIWPEPLPNYTDPCSNVKMKCPDCGEVTELYAYLIDRILQAPEPCIRSI
Ga0307479_101182262	3300031962	Hardwood Forest Soil	MPSYDSFMCPNCEGHFRVVWPDPVPTHLHLCSKIKMKCPDCNEVTELYDFLIDRITQPPDPSIPTVDVLSISPRDLHRP
Ga0307471_1001615012	3300032180	Hardwood Forest Soil	MGGYLIPCEGHFRVVWPDPVPTHLHLCSKIKMKCPDCNEVTELYDFLIDRITQPPDPSIPTVDVLSISPRDLNRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089218

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences