Scaffold Ga0209647_1005598

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1005598
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9153
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021300	Metagenome / Metatranscriptome	219	N
F046662	Metagenome / Metatranscriptome	151	Y
F097940	Metagenome / Metatranscriptome	104	N
F101778	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_10055981	F046662	GGA	MNAFEDAAYTMAALTATVALFRALVKKGVLTRDEAVRVLLDEAVSRAI
Ga0209647_100559811	F101778	AGG	MNLLVIFIITLVIGQSLSVGLGLLVERYSTPYAGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA
Ga0209647_10055982	F097940	N/A	LLVRPKGAACAFSASLSHRSPKLRWLAAISGELANLTRRAHSAAWARQYMTYDDIARSQYAASAPLPDEEHERRYCPITTIDAVRRDARG
Ga0209647_10055988	F021300	N/A	MQSPKRDAFSAPLPPALIYAAALTCGVLAALALEIYLTGAGFDPANLWENSLSSGTRDLRTAGPWWGIAALAFIVSGITAAALSRFPPPWHRYRLLRWVAAGVILLLVEHITHSAGGSEGVAAGVNVAVRLMALCLAALMALLGAYVAVRR