Metagenome / Metatranscriptome Family F101778

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101778
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	79 residues
Representative Sequence	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSASEAA
Number of Associated Samples	95
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.78 %
% of genes near scaffold ends (potentially truncated)	37.25 %
% of genes from short scaffolds (< 2000 bps)	73.53 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.510 % of family members)
Environment Ontology (ENVO)	Unclassified (21.569 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.922 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.78% β-sheet: 27.85% Coil/Unstructured: 49.37%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01734	Patatin	18.63
PF02566	OsmC	16.67
PF03401	TctC	4.90
PF00753	Lactamase_B	3.92
PF12146	Hydrolase_4	2.94
PF07681	DoxX	2.94
PF07729	FCD	0.98
PF12697	Abhydrolase_6	0.98
PF12695	Abhydrolase_5	0.98
PF00717	Peptidase_S24	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	18.63
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	18.63
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	18.63
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	16.67
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	16.67
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.90
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	2.94
COG4270	Uncharacterized membrane protein	Function unknown [S]	2.94
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.98
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	92.16 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	89.22 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.67 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.86 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.86 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	1.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.86 %
Mycolicibacterium rhodesiae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium rhodesiae	1.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0846201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1032	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101715687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	987	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101717229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M
3300001867\|JGI12627J18819_10102041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1184	Open in IMG/M
3300002245\|JGIcombinedJ26739_100481358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1118	Open in IMG/M
3300002910\|JGI25615J43890_1086607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300003505\|JGIcombinedJ51221_10211010	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300004633\|Ga0066395_10286168	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300005163\|Ga0066823_10032586	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300005167\|Ga0066672_10084392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1908	Open in IMG/M
3300005173\|Ga0066822_1000655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1321	Open in IMG/M
3300005178\|Ga0066688_10048320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2450	Open in IMG/M
3300005181\|Ga0066678_10019296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3537	Open in IMG/M
3300005332\|Ga0066388_101764660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1098	Open in IMG/M
3300005406\|Ga0070703_10057635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1262	Open in IMG/M
3300005434\|Ga0070709_10856829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300005435\|Ga0070714_100279120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1552	Open in IMG/M
3300005467\|Ga0070706_101511832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300005468\|Ga0070707_100327551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1488	Open in IMG/M
3300005518\|Ga0070699_100494758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1110	Open in IMG/M
3300005555\|Ga0066692_10734780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300005559\|Ga0066700_10179374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1453	Open in IMG/M
3300005561\|Ga0066699_10247529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1257	Open in IMG/M
3300005713\|Ga0066905_100213184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1454	Open in IMG/M
3300005713\|Ga0066905_100567280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	955	Open in IMG/M
3300005764\|Ga0066903_108339915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium rhodesiae	529	Open in IMG/M
3300005764\|Ga0066903_108366292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium rhodesiae	528	Open in IMG/M
3300006049\|Ga0075417_10732838	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300006173\|Ga0070716_100024634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3205	Open in IMG/M
3300006176\|Ga0070765_101149638	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300006574\|Ga0074056_11370832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	987	Open in IMG/M
3300006606\|Ga0074062_10033685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2196	Open in IMG/M
3300006755\|Ga0079222_12450137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300006797\|Ga0066659_10082262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2140	Open in IMG/M
3300006871\|Ga0075434_100044289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4414	Open in IMG/M
3300006903\|Ga0075426_11069020	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300006904\|Ga0075424_100214678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2044	Open in IMG/M
3300006953\|Ga0074063_10058779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1136	Open in IMG/M
3300007255\|Ga0099791_10004348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5813	Open in IMG/M
3300009012\|Ga0066710_102870047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300009089\|Ga0099828_10067843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3011	Open in IMG/M
3300009147\|Ga0114129_11672651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	777	Open in IMG/M
3300010043\|Ga0126380_11736699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300010359\|Ga0126376_10261124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1480	Open in IMG/M
3300010366\|Ga0126379_10138950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2242	Open in IMG/M
3300012205\|Ga0137362_10817138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	798	Open in IMG/M
3300012210\|Ga0137378_10820453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	843	Open in IMG/M
3300012362\|Ga0137361_10125158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2269	Open in IMG/M
3300012917\|Ga0137395_10097035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1952	Open in IMG/M
3300012918\|Ga0137396_10577996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M
3300012929\|Ga0137404_11075157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300012957\|Ga0164303_10103268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1417	Open in IMG/M
3300012971\|Ga0126369_11642937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300014154\|Ga0134075_10202766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	853	Open in IMG/M
3300016270\|Ga0182036_11515860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300017654\|Ga0134069_1241521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300018468\|Ga0066662_10535967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1077	Open in IMG/M
3300018468\|Ga0066662_11280617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	749	Open in IMG/M
3300020581\|Ga0210399_10121027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2151	Open in IMG/M
3300021170\|Ga0210400_10488153	All Organisms → cellular organisms → Bacteria → Proteobacteria	1017	Open in IMG/M
3300021432\|Ga0210384_10067632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3221	Open in IMG/M
3300021559\|Ga0210409_11420415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300024330\|Ga0137417_1430294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2896	Open in IMG/M
3300025910\|Ga0207684_10017805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6093	Open in IMG/M
3300025910\|Ga0207684_10153560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1981	Open in IMG/M
3300025922\|Ga0207646_10568641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1018	Open in IMG/M
3300026304\|Ga0209240_1003625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5830	Open in IMG/M
3300026309\|Ga0209055_1165672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	707	Open in IMG/M
3300026319\|Ga0209647_1005598	All Organisms → cellular organisms → Bacteria → Proteobacteria	9153	Open in IMG/M
3300026508\|Ga0257161_1019973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1275	Open in IMG/M
3300026514\|Ga0257168_1074061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	753	Open in IMG/M
3300026538\|Ga0209056_10351969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	966	Open in IMG/M
3300026551\|Ga0209648_10007106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9611	Open in IMG/M
3300026557\|Ga0179587_10194447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1283	Open in IMG/M
3300027050\|Ga0209325_1002742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1696	Open in IMG/M
3300027071\|Ga0209214_1038883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300027502\|Ga0209622_1001296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3536	Open in IMG/M
3300027655\|Ga0209388_1018444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1938	Open in IMG/M
3300027903\|Ga0209488_10001536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19698	Open in IMG/M
3300028047\|Ga0209526_10003345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10941	Open in IMG/M
3300031543\|Ga0318516_10191298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1180	Open in IMG/M
3300031543\|Ga0318516_10519440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	683	Open in IMG/M
3300031544\|Ga0318534_10238040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1050	Open in IMG/M
3300031545\|Ga0318541_10166540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1213	Open in IMG/M
3300031561\|Ga0318528_10045994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2196	Open in IMG/M
3300031561\|Ga0318528_10449086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300031564\|Ga0318573_10222513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1003	Open in IMG/M
3300031572\|Ga0318515_10723204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300031720\|Ga0307469_12137085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300031744\|Ga0306918_10226704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1418	Open in IMG/M
3300031751\|Ga0318494_10074844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1830	Open in IMG/M
3300031765\|Ga0318554_10580493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300031778\|Ga0318498_10235437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	827	Open in IMG/M
3300031799\|Ga0318565_10023059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2753	Open in IMG/M
3300031835\|Ga0318517_10575025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300031893\|Ga0318536_10664535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300031941\|Ga0310912_10108853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2052	Open in IMG/M
3300031954\|Ga0306926_10178069	All Organisms → cellular organisms → Bacteria → Proteobacteria	2637	Open in IMG/M
3300032009\|Ga0318563_10687852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300032041\|Ga0318549_10107434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1221	Open in IMG/M
3300032090\|Ga0318518_10047796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2024	Open in IMG/M
3300033289\|Ga0310914_10072380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2902	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.10%
Host-Associated	Host-Associated	4.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.10%
Plants	Host-Associated → Plants	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.57%
Loam	Environmental → Terrestrial → Soil → Loam	23.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.51%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005173	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_08462011	3300000033	Soil	AQGQAMSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA*
INPhiseqgaiiFebDRAFT_1017156872	3300000364	Soil	MXLLVIFIISXVXGQSLSXGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA*
INPhiseqgaiiFebDRAFT_1017172292	3300000364	Soil	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGXLSSAGKSSAXEXA*
JGI12627J18819_101020412	3300001867	Forest Soil	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSASEAA*
JGIcombinedJ26739_1004813581	3300002245	Forest Soil	ERCRHAVKAQGQAMNLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSASEAA*
JGI25615J43890_10866071	3300002910	Grasslands Soil	MNLLVIFIITLVIGQSLSVGLGLLVERYSTPYAGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA*
JGIcombinedJ51221_102110101	3300003505	Forest Soil	NLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA*
Ga0066395_102861682	3300004633	Tropical Forest Soil	MILLIVFIISVVIGQALSVSVGLVVERYYTPYTGVIAFIASYFTMFWLAWRFAVRVTRPRLPARQPAE*
Ga0066823_100325862	3300005163	Soil	MNLLVIFIITLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA*
Ga0066672_100843922	3300005167	Soil	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSASEAA*
Ga0066822_10006552	3300005173	Soil	MNLLVIFIISVVIGQSFSIGLGLLVERYSTSYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA*
Ga0066688_100483202	3300005178	Soil	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVLVTSPRLPERGGLSSAGKSSASETA*
Ga0066678_100192962	3300005181	Soil	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA*
Ga0066388_1017646602	3300005332	Tropical Forest Soil	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRVTAPRSPERGSLSSAGKSSASEAA*
Ga0070703_100576352	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPERGGLSSAGKSSASEAA*
Ga0070709_108568292	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA*
Ga0070714_1002791202	3300005435	Agricultural Soil	LVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA*
Ga0070706_1015118321	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VAERRRHAVKAQGQAMSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRVTAPRSPERGGLSSAGKSSASEAA*
Ga0070707_1003275512	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPERGGLSSAGKSSASEAA*
Ga0070699_1004947581	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA*
Ga0066692_107347802	3300005555	Soil	MSLLVIFIISLVIGQPLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA*
Ga0066700_101793742	3300005559	Soil	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRVTAPRSPERGGLSSAGKSSASEAA*
Ga0066699_102475292	3300005561	Soil	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRVTAPRSPERGGLSSAGKSSASEAA*
Ga0066905_1002131842	3300005713	Tropical Forest Soil	MKLLVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRITAPRSPERGGLSGAGKSSAREAA*
Ga0066905_1005672801	3300005713	Tropical Forest Soil	GQSLSIGLGLLVERYSTPYTGLITFIGSYFLMFWLAWRFAVRITAPRSPERGGLSSAGKSSASEAA*
Ga0066903_1083399151	3300005764	Tropical Forest Soil	MILLIVFIISVVIGQALSVSVGLVVERYYTPYTGVIAFIASYFTMFWLAWRIAVRVTRPRVPARQPAE*
Ga0066903_1083662921	3300005764	Tropical Forest Soil	MILLIVFIISVVIGQALSVCVGLVVERYYTPYTGVIAFIASYFTMFWLAWRFAVRVTRPRLPARQPAE*
Ga0075417_107328381	3300006049	Populus Rhizosphere	AMNLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA*
Ga0070716_1000246342	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA*
Ga0070765_1011496382	3300006176	Soil	MNLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA*
Ga0074056_113708321	3300006574	Soil	QSFSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA*
Ga0074062_100336852	3300006606	Soil	MNLLVIFIISVVIGQSFSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA*
Ga0079222_124501372	3300006755	Agricultural Soil	AQGQAMNLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPERGSLSSAGKSSASEAA*
Ga0066659_100822622	3300006797	Soil	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRVTAPRSPERGGLSSAGKSSAREVA*
Ga0075434_1000442892	3300006871	Populus Rhizosphere	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA*
Ga0075426_110690202	3300006903	Populus Rhizosphere	MNLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA*
Ga0075424_1002146782	3300006904	Populus Rhizosphere	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA*
Ga0074063_100587792	3300006953	Soil	MNLLVIFIISVVIGQSFSIGLGLLVERYSTPYTGMVAFIGSYFVMFWLAWRFAVRITEPRSPERGSLSSAGKSSSEAA*
Ga0099791_100043482	3300007255	Vadose Zone Soil	MSLLVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA*
Ga0066710_1028700472	3300009012	Grasslands Soil	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSA
Ga0099828_100678432	3300009089	Vadose Zone Soil	MSLLVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPERGSAGKSSASEAA*
Ga0114129_116726512	3300009147	Populus Rhizosphere	MNLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSASEAA*
Ga0126380_117366991	3300010043	Tropical Forest Soil	SPDAIDKWGKVMILLIVFIISVVIGQALSVCVGLVVERYYTPYTGVIAFIASYFTMFWLAWRFAVRVTRPRLPARQPAE*
Ga0126376_102611241	3300010359	Tropical Forest Soil	MILLIVFIISVVIGQALSVCVGLVVERYYTPYTGVIAFFASYFTMFWLAWRFAVRVTRPRLPARQPAE*
Ga0126379_101389501	3300010366	Tropical Forest Soil	MILLIVFIISVVIGQALSVCVGLVVERYYTPYTGVIAFIASYFTMFWLAWRIAVRVTRPRVPARQPAE*
Ga0137362_108171382	3300012205	Vadose Zone Soil	MSLLVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA*
Ga0137378_108204532	3300012210	Vadose Zone Soil	VIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA*
Ga0137361_101251581	3300012362	Vadose Zone Soil	LVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA*
Ga0137395_100970352	3300012917	Vadose Zone Soil	MNLLVIFIITLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSASEAA*
Ga0137396_105779962	3300012918	Vadose Zone Soil	MNLLVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA*
Ga0137404_110751572	3300012929	Vadose Zone Soil	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGLVTFITSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA*
Ga0164303_101032681	3300012957	Soil	QAMNLLVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA*
Ga0126369_116429372	3300012971	Tropical Forest Soil	MNLLVVFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSASEAA*
Ga0134075_102027662	3300014154	Grasslands Soil	VAERRRHAVKAQGQAMSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGLVTFITSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREGA*
Ga0182036_115158602	3300016270	Soil	GQAMNLLVIFIVSLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPQRGDLSSAGKSSASEAA
Ga0134069_12415212	3300017654	Grasslands Soil	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKTGSVSAVTTMAAIDSANGAQ
Ga0066662_105359672	3300018468	Grasslands Soil	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRVTAPRSPERGGLSSAGKSSASEAA
Ga0066662_112806171	3300018468	Grasslands Soil	HAVKAQGQAMSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA
Ga0210399_101210272	3300020581	Soil	MNLLVIFIISVVIGQSFSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA
Ga0210400_104881532	3300021170	Soil	MNLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA
Ga0210384_100676322	3300021432	Soil	MNLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLNSAGKSSAREAA
Ga0210409_114204152	3300021559	Soil	GQAMNLLVIFIISVVIGQSFSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLNSAGKSSAREAA
Ga0137417_14302944	3300024330	Vadose Zone Soil	MSLLVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRITAPRSPERGSLSSAGKS
Ga0207684_100178056	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA
Ga0207684_101535601	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPERGGLSSAGKSSASEAA
Ga0207646_105686411	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VKAQGQAMSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREVA
Ga0209240_10036252	3300026304	Grasslands Soil	MSLLVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0209055_11656722	3300026309	Soil	SLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRVTAPRSPERGGLSSAGKSSASEAA
Ga0209647_100559811	3300026319	Grasslands Soil	MNLLVIFIITLVIGQSLSVGLGLLVERYSTPYAGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA
Ga0257161_10199732	3300026508	Soil	MNLLVVFIITLVIGQSLSVGLGLLVERYSTPYIGMVTFIGSYFAMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA
Ga0257168_10740612	3300026514	Soil	LVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0209056_103519692	3300026538	Soil	MSLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGK
Ga0209648_1000710610	3300026551	Grasslands Soil	MNLLVIFIITLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0179587_101944472	3300026557	Vadose Zone Soil	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFLMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0209325_10027423	3300027050	Forest Soil	SPLRVAERRRHAVKAQGQAMSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPERGGLSSAGKSSASEAA
Ga0209214_10388831	3300027071	Forest Soil	RVAERRRHAVKAQGQAMNLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSASEAA
Ga0209622_10012962	3300027502	Forest Soil	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA
Ga0209388_10184442	3300027655	Vadose Zone Soil	MSLLVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVAFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0209488_1000153619	3300027903	Vadose Zone Soil	MSLLVIFIITLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0209526_1000334511	3300028047	Forest Soil	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLNSAGKSSAREAA
Ga0318516_101912981	3300031543	Soil	MNLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0318516_105194402	3300031543	Soil	VVIGQALSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVGITAPRSPERGSLSSAGKSSASEAA
Ga0318534_102380402	3300031544	Soil	VIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPQRGDLSSAGKSSASEAA
Ga0318541_101665402	3300031545	Soil	MNLLVIFIVSLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPERGSLSSAGKSSASEAA
Ga0318528_100459943	3300031561	Soil	VKAQGQAMNLLVIFIISVVIGQALSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVGITAPRSPERGSLSSAGKSSASEAA
Ga0318528_104490862	3300031561	Soil	MNLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRGGLSSAGKSSASEAA
Ga0318573_102225132	3300031564	Soil	MSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPQRGDLSSAGKSSASEAA
Ga0318515_107232041	3300031572	Soil	FIISVVIGQALSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0307469_121370851	3300031720	Hardwood Forest Soil	MNLLVIFIISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0306918_102267042	3300031744	Soil	MNLLVIFIISVVIGQALSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVGITAPRSPERGSLSSAGKSSASEAA
Ga0318494_100748443	3300031751	Soil	QGQAMNLLVIFIVSLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPERGSLSSAGKSSASEAA
Ga0318554_105804932	3300031765	Soil	MNLLIIFLISVVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0318498_102354372	3300031778	Soil	WDVAERYRHAVKAQGQAMNLLVIFIISVVIGQALSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVGITAPRSPERGSLSSAGKSSASEAA
Ga0318565_100230591	3300031799	Soil	MNLLVIFIVSLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPQRGDLSSAGKSSASEAA
Ga0318517_105750252	3300031835	Soil	SPLRVAERRRHAVKAQGQAMNLLVIFIISLVIGQSLSVGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGSLSSAGKSSASEAA
Ga0318536_106645351	3300031893	Soil	AQGQAMNLLVIFIISVVIGQALSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVGITAPRSPERGSLSSAGKSSASEAA
Ga0310912_101088533	3300031941	Soil	ISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPQRGDLSSAGKSSASEAA
Ga0306926_101780691	3300031954	Soil	MNLLVIFIISVVIGQALSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVGITAPRSPERGSLSSAGKSS
Ga0318563_106878522	3300032009	Soil	VIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPERGSLSSAGKSSASEAA
Ga0318549_101074343	3300032041	Soil	MNLLVIFIVSLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPQRGDLSSAGKS
Ga0318518_100477962	3300032090	Soil	SPVSVAERRRRAVKAQGQAMSLLVIFIISLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPQRGDLSSAGKSSASEAA
Ga0310914_100723801	3300033289	Soil	QGQAMNLLVIFIVSLVIGQSLSIGLGLLVERYSTPYTGMVTFIGSYFVMFWLAWRFAVRVTAPRSPQRGDLSSAGKSSASEAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101778

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences